PTM
			
		
		

			

				
PTM
				
Formylation
			
		

		

			

				
Sequence Information
			

		
		

			

				
Uniprot AC
				
P61829
			
			

				
Organism
				
YEAST (Baker's yeast)
			
			

				
Modified Amino Acid
				
M(Met) 1
			
			

				
Annotation dbPTM details
				
N-formylmethionine.
			
		

		

			

				
Structure Information
			

		
		

			

				
PDB ID Code
				
4F4S
			
			

				
Model
				
-
			
			

				
Chain
				
B
			
			

				
Position
				
1
			
			

				
SCOP Class
				
None
			
			

				
MODRES
				
N-FORMYLMETHIONINE                       
			
		

		

			

				
Related PTM
			

		
		

			

				
Found in same PDB Chain
				
-
			
			

				
Found in same Uniprot AC
Sort by:
PDB ID Code
  (idpdb-chain_aa)
Sequence position
  (aa_idpdb-chain)
				
3U2F-K_M1	3U2F-L_M1	3U2F-M_M1	3U2F-N_M1	
3U2F-O_M1	

3U2Y-K_M1	3U2Y-L_M1	3U2Y-M_M1	3U2Y-N_M1	
3U2Y-O_M1	

3U32-K_M1	3U32-L_M1	3U32-M_M1	3U32-N_M1	
3U32-O_M1	

3UD0-K_M1	3UD0-L_M1	3UD0-M_M1	3UD0-N_M1	
3UD0-O_M1	

4F4S-A_M1	4F4S-C_M1	4F4S-D_M1	4F4S-E_M1	
4F4S-K_M1	4F4S-L_M1	4F4S-M_M1	4F4S-N_M1	
4F4S-O_M1
M1_3U2F-K	M1_3U2F-L	M1_3U2F-M	M1_3U2F-N	
M1_3U2F-O	M1_3U2Y-K	M1_3U2Y-L	M1_3U2Y-M	
M1_3U2Y-N	M1_3U2Y-O	M1_3U32-K	M1_3U32-L	
M1_3U32-M	M1_3U32-N	M1_3U32-O	M1_3UD0-K	
M1_3UD0-L	M1_3UD0-M	M1_3UD0-N	M1_3UD0-O	
M1_4F4S-A	M1_4F4S-C	M1_4F4S-D	M1_4F4S-E	
M1_4F4S-K	M1_4F4S-L	M1_4F4S-M	M1_4F4S-N	
M1_4F4S-O
			
		
	
		
	

Note: As the images production is automatic, the focus on the PTM site could not be the most optimized.
      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.

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If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
			

1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			

			

			

				

REMARK 470     FME B   1    CG   SD   CE                                        
REMARK 500    FME B   1   O   -  C   -  N   ANGL. DEV. = -12.6 DEGREES          
REMARK 500    FME B   1        -16.59                                           
MODRES 4F4S FME B    1  MET  N-FORMYLMETHIONINE                                 
LINK         C   FME B   1                 N   GLN B   2     1555   1555  1.42  
HETATM  547  N   FME B   1      37.669  15.376  64.393  1.00 51.24           N  
ANISOU  547  N   FME B   1     8086   7476   3904    485    708   -603       N  
HETATM  548  CN  FME B   1      36.867  14.320  64.198  1.00 49.45           C  
ANISOU  548  CN  FME B   1     7393   7513   3882    683    685   -431       C  
HETATM  549  O1  FME B   1      36.777  13.784  63.096  1.00 48.07           O  
ANISOU  549  O1  FME B   1     6958   7385   3920    667    629   -356       O  
HETATM  550  CA  FME B   1      38.153  16.175  63.270  1.00 50.84           C  
ANISOU  550  CA  FME B   1     8323   7156   3835    345    721   -694       C  
HETATM  551  CB  FME B   1      38.515  17.583  63.735  1.00 54.59           C  
ANISOU  551  CB  FME B   1     9562   7263   3915    195    833   -868       C  
HETATM  552  C   FME B   1      39.334  15.531  62.599  1.00 48.59           C  
ANISOU  552  C   FME B   1     7699   7023   3738    -44    535   -709       C  
HETATM  553  O   FME B   1      39.378  15.533  61.348  1.00 47.10           O  
ANISOU  553  O   FME B   1     7428   6761   3707    -36    519   -686       O