SWift and Optimized Recognition of protein Domains
The SWORD2 partitioning algorithm produces multiple alternative domain assignments for a given protein structure. This unique approach handles ambiguous protein structure partitioning, admitting several solutions. The decomposition of the protein structure into domains is achieved through the hierarchical clustering of Protein Units, evolutionarily preserved structural descriptors at the interface between secondary structures and domains.
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Vander Meersche, Y., de Brevern, A. G., Postic, G., & Gelly, J. C. (2022).
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analysis of protein 3D structures. Nucleic acids research, gkac370.
50(W1), W732–W738 10.1093/nar/gkac370
Postic, G., Ghouzam, Y., Chebrek, R., & Gelly, J. C. (2017).
An ambiguity principle for assigning
protein structural domains.
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SWORD2_summary.txt
. The original SWORD output is available in
SWORD/sword.txt
file instead.