Sequence     &     Structural     Information
	
PTM
PTM N-linked Glycosylation
Sequence Information
Uniprot AC Q700S9
Organism PENSQ (Penicillium sp.)
Modified Amino Acid N(Asn) 917
Annotation dbPTM details N-linked (GlcNAc...).
Structure Information
PDB ID Code 1XC6
Model -
Chain A
Position 917
SCOP Class c (Alpha and beta proteins (a/b))
MODRES GLYCOSYLATION SITE
Related PTM
Found in same PDB Chain 374 456 625 707 763 780
Found in same Uniprot AC
Sort by: PDB ID Code (idpdb-chain_aa) Sequence position (aa_idpdb-chain)
Gallery (?)
Slide 1
Slide 2
Example Frame



Note: As the images production is automatic, the focus on the PTM site could not be the most optimized.
      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.
Alignment
(?)

	           Numerotation

	(?)       Uniprot Sequence
	(?)                Clustal
	(?)           PDB Sequence
	(?)        PDB Information
	(?)          DSSP Sequence
	(?) Protein Block Sequence
	
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MKLLSSWVVAALAAQAAGAAISHKLDGFTIREHADPAKRALLQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDYDVAGTNILYSTAEVFTWKKFNNEKVLVLYGGPGEHHEFAVSGASSSSVVEGSSSGISSKKVGKALVVAWDVSTARRIVQVGSLKVFLLDRNSAYNYWVPQVPTKGTAPGYSNQETTASSIIVKAGYLVRSAYLDGNDLHIQADFNATTPIEVVGAPSGAKNLVINGKKTQTKVDKNGIWSASVAYTAPKVQLPSLKSLKWKSVDTLPEAKNTYDDSAWTSADHAYTNNSAHSLQTPTSLFASDYGYHTGALLFRGHFTANGKEKTFFVQTKGGTAYGHSIWINETYVGSWAGTSINDNNNATYTLPTLQSGKNYVITVVIDNMGLDEDWTIGSEDMKNPRGIIQYSLSGQEASAISWKLTGNLGGENYRDTVRGPLNEGGLYAERQGFHQPQPPTQKWDSSSPFTGLTKPGIRFYSTSFDLDLPSGYDIPLYFNFGNSTSTPAAYRVQLYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLALSLWAQEDNGAKLDSFELINTTPVLTSLGEVKSVNQPKYQARKGAY
                                        ***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
----------------------------------------LLQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDYDVAGTNILYSTAEVFTWKKFNNEKVLVLYGGPGEHHEFAVSGASSSSVVEGSSSGISSKKVGKALVVAWDVSTARRIVQVGSLKVFLLDRNSAYNYWVPQVPTKGTAPGYSNQETTASSIIVKAGYLVRSAYLDGNDLHIQADFNATTPIEVVGAPSGAKNLVINGKKTQTKVDKNGIWSASVAYTAPKVQLPSLKSLKWKSVDTLPEAKNTYDDSAWTSADHAYTNNSAHSLQTPTSLFASDYGYHTGALLFRGHFTANGKEKTFFVQTKGGTAYGHSIWINETYVGSWAGTSINDNNNATYTLPTLQSGKNYVITVVIDNMGLDEDWTIGSEDMKNPRGIIQYSLSGQEASAISWKLTGNLGGENYRDTVRGPLNEGGLYAERQGFHQPQPPTQKWDSSSPFTGLTKPGIRFYSTSFDLDLPSGYDIPLYFNFGNSTSTPAAYRVQLYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLALSLWAQEDNGAKLDSFELINTTPVLTSLGEVKSVNQPKYQARKGAY
                                        ___________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________
                                        CCCSSEEECSSCEEETTEEECEEEEEECGGGSCCGGGHHHHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEEEEEEESCCCTTBGGGGCCGGGGGCSSCTTSSCHHHHHHHHHHHHHHHHHHHHTBGGGTSSEEEEEESSCCCCBCTTCCCCSCHHHHHHHHHHHHHTTCCSCBBCCBSSSSCTTCTTSCTTCCSBCEEEECTTCSCCSSTTCCCTTCSCCCHHHHHHHHCTTSCCEEEEEESCCCCCTTCCCHHHHHHHTSHHHHHHHHHHHHTTTCSEEEEEEEECCBCCTTCBCTTSCSBCCTTCSBCTTSCCCSHHHHHHHHHHHHHHTCGGGTTSEECCCBSSSSBSCTTEEEEEEECSSTTSCEEEEEEESSTTCCCCEEECEEEEETTEEEEECTTSCCEEECTTCCEEEEEEEEETTEEEEEESSEEEEEEEETTEEEEEEEECTTCEEEEEEETCCCCEEEESCCTTCEEEEETTEEEEEEECCSSCEEEEETTEEEEEEEHHHHTTEECCCCCSSSSCCCCCSHHHHHTCCEEECSSEEEEEEEETTEEEEEEEBSSCEEEEEESCCTTCCEEEETTEEECCEECTTSCEEEEECCCCCCCCCCCGGGSCCEEEESCGGGSTTCCCTTSEECCCSSCCCTTCCCSSSSCCBGGGGTCCSSCEEEEEEEECCSCCCEEEEEEECSTTCCEEEEETTEEEEEECCCTTCSEEEEEEECCCCCTTCEEEEEEEECCCCCCCCCSBTCCGGGCCCEEEEEEETTSCGGGCEEEEESSTTTTSCSCTTTCSSSCCSSHHHHHTTTSSSCCCTTSBCCCTTTCBSSSEEEEEEEEEECCCCTTEECCEEEEECCCCSSCCCEEEEEEETTEEEEEEETTTCSCCEEEECBTTBCTTSEEEEEEEEEECSTTCBCCSCEEEEECCCEECCCCCCCCCCCCCCCCCTTCC
                                        ZZckbgcdfkbcceehiacddddddddfkloccfklmmmmmmmmmmnopabdcddddfklmmmpghiacdehjllmklmmmmmmmnopacdddehjangjopghhlpafklmmpgcdehiabfklmmmmmmmmmmmmmmmmmmpmklopabfbdcehjhiabceehiakbccfklmmmmmmmmmmnopabdcddddfbanhpaiahilghiafbdcddddfkojbfklmmbccehkaccklmmmmmmmmmmbccddfbgcfbdcddehiabjklmmmmmmmklmmmmmmmmmmnopabdcdddfblbjaehhlacfkbcfblnlopabdfkopafbfklmmmmmmmmmmmmmmklmmpccddddfklmmcbfkbccdddddfblklccddddddfblmbcbdcddddddddfkbpadddfkgpjddddehiaddddehiaeehiacfbafbdcfbdcdehjaccddddddehiacddddehiabdcdfedjfehiacddehjbdcddddddfbdcdddehjbccddddfklmmmpccddddfbdjbnbiadfklmmmpccddddfbcfbdcdehjaccdddddfbdcddddehiafklmbdceehiacdddddfkopacddddddddddddddfklpccddddfblklpckbccklpccdfbgbdfbfkbccfbfbacbfklnopaghjdddddddddehlafbdcddddebehiacdddehjbcfbdcebpakbcbdcdddddddddehiacddddddddebjcddfbghjlmmmpccdjfbdcdehiafklpccdddddehijmcfblmnojklpccbfklmnopmpghiafklpccddfklmpabecdddddddddddddehiacddddddddfbfbdcdddddddeehiacbdcdfknombfbdcddehjaccbbccddddddddfbfklpadfbdcdddddddddfbdcddddddddddddehiZZ

Scripts     (PyMol,     Modeller,     ...)

PyMol
	Download
Modeller
	
If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
			
LLQKYVTWDEHSIFVNGERLMIFSGEVHPYRLPVASLYIDIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLLARPGPYINAEVSGGGFPGWLQRVDGILRTSDEAYLKATDNYASNIAATIAKAQITNGGPIILYQPENEYSGACCGYNGFPDGSYMQYIEDHARDAGIVVPFISNDAWAAGHNAPGTGAGAVDIYGHDSYPLGFDCANPSTWPSGNLPTYFHTSHEQQSPSTPYSLVEFQGGAFDPWGGVGFAKCAALLNHEFERVFYKNDFSFGVAFLNLYMIFGGTNWGNLGHPGGYTSYDYGSAISESRNITREKYSELKLLGNFAKVSPGYLVANPGDLSTSTYTNTADLTVTPLLGSNSSASSFFVIRHSDYSSQASVEYKLTVPTSAGNLTIPQLGGSLTLSGRDSKIHVTDYDVAGTNILYSTAEVFTWKKFNNEKVLVLYGGPGEHHEFAVSGASSSSVVEGSSSGISSKKVGKALVVAWDVSTARRIVQVGSLKVFLLDRNSAYNYWVPQVPTKGTAPGYSNQETTASSIIVKAGYLVRSAYLDGNDLHIQADFNATTPIEVVGAPSGAKNLVINGKKTQTKVDKNGIWSASVAYTAPKVQLPSLKSLKWKSVDTLPEAKNTYDDSAWTSADHAYTNNSAHSLQTPTSLFASDYGYHTGALLFRGHFTANGKEKTFFVQTKGGTAYGHSIWINETYVGSWAGTSINDNNNATYTLPTLQSGKNYVITVVIDNMGLDEDWTIGSEDMKNPRGIIQYSLSGQEASAISWKLTGNLGGENYRDTVRGPLNEGGLYAERQGFHQPQPPTQKWDSSSPFTGLTKPGIRFYSTSFDLDLPSGYDIPLYFNFGNSTSTPAAYRVQLYVNGYQYGKYVNNIGPQTSFPVPEGILNYHGTNWLALSLWAQEDNGAKLDSFELINTTPVLTSLGEVKSVNQPKYQARKGAY
1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			
REMARK 500 ASN A 917 61.41 -155.36
MODRES 1XC6 ASN A 917 ASN GLYCOSYLATION SITE
LINK ND2 ASN A 917 C1 NAG F 1 1555 1555 1.45
ATOM 6738 N ASN A 917 56.184 15.517 108.608 1.00 24.36 N
ATOM 6739 CA ASN A 917 57.082 16.630 108.922 1.00 27.10 C
ATOM 6740 C ASN A 917 58.466 16.070 109.246 1.00 30.24 C
ATOM 6741 O ASN A 917 58.980 16.252 110.347 1.00 30.75 O
ATOM 6742 CB ASN A 917 56.552 17.433 110.120 1.00 23.14 C
ATOM 6743 CG ASN A 917 57.354 18.706 110.370 1.00 21.45 C
ATOM 6744 OD1 ASN A 917 57.794 19.357 109.423 1.00 19.75 O
ATOM 6745 ND2 ASN A 917 57.526 19.079 111.635 1.00 19.04 N
REMARK 620 4 NAG F 1 O7 85.3 85.7 134.2
LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.38
LINK NA NA A8001 O7 NAG F 1 1555 1555 2.51
HETATM 7719 C1 NAG F 1 58.178 20.346 111.921 1.00 18.83 C
HETATM 7720 C2 NAG F 1 57.391 21.160 112.958 1.00 17.70 C
HETATM 7721 C3 NAG F 1 58.096 22.499 113.183 1.00 17.49 C
HETATM 7722 C4 NAG F 1 59.577 22.303 113.529 1.00 18.67 C
HETATM 7723 C5 NAG F 1 60.256 21.363 112.522 1.00 20.24 C
HETATM 7724 C6 NAG F 1 61.656 20.983 112.959 1.00 22.73 C
HETATM 7725 C7 NAG F 1 55.027 20.708 112.987 1.00 17.00 C
HETATM 7726 C8 NAG F 1 53.687 20.845 112.283 1.00 14.03 C
HETATM 7727 N2 NAG F 1 56.042 21.401 112.486 1.00 17.26 N
HETATM 7728 O3 NAG F 1 57.454 23.216 114.227 1.00 15.70 O
HETATM 7729 O4 NAG F 1 60.240 23.580 113.488 1.00 16.96 O
HETATM 7730 O5 NAG F 1 59.512 20.133 112.389 1.00 18.97 O
HETATM 7731 O6 NAG F 1 62.364 20.359 111.898 1.00 31.30 O
HETATM 7732 O7 NAG F 1 55.135 19.981 113.973 1.00 16.69 O
LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.38
HETATM 7733 C1 NAG F 2 60.697 24.104 114.682 1.00 17.30 C
HETATM 7734 C2 NAG F 2 61.753 25.178 114.379 1.00 18.14 C
HETATM 7735 C3 NAG F 2 62.139 25.949 115.645 1.00 17.75 C
HETATM 7736 C4 NAG F 2 60.907 26.413 116.437 1.00 15.09 C
HETATM 7737 C5 NAG F 2 59.957 25.232 116.649 1.00 15.85 C
HETATM 7738 C6 NAG F 2 58.677 25.573 117.407 1.00 14.15 C
HETATM 7739 C7 NAG F 2 63.354 24.825 112.605 1.00 21.89 C
HETATM 7740 C8 NAG F 2 64.590 24.090 112.113 1.00 23.53 C
HETATM 7741 N2 NAG F 2 62.937 24.540 113.835 1.00 20.90 N
HETATM 7742 O3 NAG F 2 62.920 27.077 115.284 1.00 17.26 O
HETATM 7743 O4 NAG F 2 61.342 26.910 117.716 1.00 16.44 O
HETATM 7744 O5 NAG F 2 59.579 24.678 115.372 1.00 16.31 O
HETATM 7745 O6 NAG F 2 57.882 26.519 116.705 1.00 12.89 O
HETATM 7746 O7 NAG F 2 62.792 25.643 111.874 1.00 23.78 O
REMARK 620 NA A8001 NA
LINK O PRO A 945 NA NA A8001 1555 1555 2.54
LINK NA NA A8001 O HOH A9281 1555 1555 2.37
LINK NA NA A8001 O HOH A9471 1555 1555 2.60
HETATM 7842 NA NA A8001 55.377 18.028 115.533 1.00 40.84 NA
LINK O6 BMA F 3 C1 MAN F 4 1555 1555 1.40
LINK O3 BMA F 3 C1 MAN F 7 1555 1555 1.40
HETATM 7747 C1 BMA F 3 60.833 28.124 118.144 1.00 16.97 C
HETATM 7748 C2 BMA F 3 61.394 28.438 119.536 1.00 17.69 C
HETATM 7749 C3 BMA F 3 61.005 29.859 119.972 1.00 18.37 C
HETATM 7750 C4 BMA F 3 61.376 30.874 118.893 1.00 18.30 C
HETATM 7751 C5 BMA F 3 60.752 30.444 117.566 1.00 18.63 C
HETATM 7752 C6 BMA F 3 61.077 31.379 116.415 1.00 19.72 C
HETATM 7753 O2 BMA F 3 62.809 28.310 119.515 1.00 18.98 O
HETATM 7754 O3 BMA F 3 61.681 30.197 121.194 1.00 20.11 O
HETATM 7755 O4 BMA F 3 60.910 32.166 119.260 1.00 16.78 O
HETATM 7756 O5 BMA F 3 61.241 29.134 117.207 1.00 17.29 O
HETATM 7757 O6 BMA F 3 62.487 31.668 116.408 1.00 20.87 O
REMARK 620 2 HOH A9281 O 160.5
HETATM 8177 O HOH A9281 57.019 17.246 114.012 1.00 23.93 O
REMARK 620 3 HOH A9471 O 83.6 90.4
HETATM 8367 O HOH A9471 54.323 15.656 115.643 1.00 35.76 O
LINK O3 MAN F 4 C1 MAN F 5 1555 1555 1.40
LINK O6 MAN F 4 C1 MAN F 6 1555 1555 1.40
HETATM 7758 C1 MAN F 4 62.846 32.622 115.447 1.00 21.90 C
HETATM 7759 C2 MAN F 4 64.327 32.984 115.611 1.00 24.38 C
HETATM 7760 C3 MAN F 4 64.532 33.709 116.947 1.00 25.30 C
HETATM 7761 C4 MAN F 4 63.616 34.922 117.040 1.00 23.84 C
HETATM 7762 C5 MAN F 4 62.157 34.520 116.785 1.00 22.76 C
HETATM 7763 C6 MAN F 4 61.261 35.733 116.659 1.00 25.88 C
HETATM 7764 O2 MAN F 4 64.734 33.825 114.541 1.00 25.15 O
HETATM 7765 O3 MAN F 4 65.893 34.149 117.066 1.00 29.12 O
HETATM 7766 O4 MAN F 4 63.742 35.514 118.325 1.00 22.81 O
HETATM 7767 O5 MAN F 4 62.052 33.803 115.533 1.00 21.01 O
HETATM 7768 O6 MAN F 4 61.793 36.590 115.632 1.00 30.26 O
HETATM 7791 C1 MAN F 7 60.850 30.633 122.231 1.00 26.40 C
HETATM 7792 C2 MAN F 7 61.683 31.357 123.290 1.00 28.88 C
HETATM 7793 C3 MAN F 7 62.640 30.368 123.957 1.00 30.15 C
HETATM 7794 C4 MAN F 7 61.863 29.180 124.527 1.00 29.99 C
HETATM 7795 C5 MAN F 7 60.967 28.550 123.447 1.00 30.88 C
HETATM 7796 C6 MAN F 7 60.037 27.497 124.014 1.00 33.28 C
HETATM 7797 O2 MAN F 7 60.819 31.919 124.268 1.00 31.82 O
HETATM 7798 O3 MAN F 7 63.350 31.015 125.001 1.00 31.88 O
HETATM 7799 O4 MAN F 7 62.779 28.211 125.012 1.00 29.61 O
HETATM 7800 O5 MAN F 7 60.133 29.559 122.833 1.00 25.55 O
HETATM 7801 O6 MAN F 7 59.665 26.553 123.020 1.00 39.47 O
HETATM 7769 C1 MAN F 5 66.757 33.280 117.738 1.00 30.83 C
HETATM 7770 C2 MAN F 5 67.922 34.085 118.326 1.00 33.21 C
HETATM 7771 C3 MAN F 5 68.794 34.658 117.202 1.00 33.48 C
HETATM 7772 C4 MAN F 5 69.226 33.551 116.230 1.00 33.78 C
HETATM 7773 C5 MAN F 5 67.998 32.777 115.743 1.00 33.94 C
HETATM 7774 C6 MAN F 5 68.347 31.598 114.861 1.00 34.02 C
HETATM 7775 O2 MAN F 5 68.709 33.251 119.164 1.00 34.59 O
HETATM 7776 O3 MAN F 5 69.940 35.274 117.766 1.00 35.47 O
HETATM 7777 O4 MAN F 5 69.901 34.121 115.118 1.00 33.04 O
HETATM 7778 O5 MAN F 5 67.259 32.267 116.875 1.00 30.97 O
HETATM 7779 O6 MAN F 5 69.300 30.758 115.490 1.00 37.73 O
HETATM 7780 C1 MAN F 6 61.005 37.710 115.352 1.00 36.24 C
HETATM 7781 C2 MAN F 6 61.801 38.646 114.448 1.00 39.60 C
HETATM 7782 C3 MAN F 6 63.001 39.213 115.230 1.00 41.47 C
HETATM 7783 C4 MAN F 6 62.543 39.866 116.541 1.00 42.43 C
HETATM 7784 C5 MAN F 6 61.685 38.888 117.344 1.00 42.14 C
HETATM 7785 C6 MAN F 6 61.083 39.520 118.590 1.00 43.88 C
HETATM 7786 O2 MAN F 6 60.964 39.696 113.987 1.00 38.61 O
HETATM 7787 O3 MAN F 6 63.699 40.161 114.438 1.00 41.92 O
HETATM 7788 O4 MAN F 6 63.674 40.238 117.313 1.00 43.87 O
HETATM 7789 O5 MAN F 6 60.598 38.406 116.529 1.00 38.62 O
HETATM 7790 O6 MAN F 6 59.774 39.031 118.849 1.00 43.07 O