PTM
			
		
		

			

				
PTM
				
N-linked Glycosylation
			
		

		

			

				
Sequence Information
			

		
		

			

				
Uniprot AC
				
Q92956
			
			

				
Organism
				
HUMAN (Human)
			
			

				
Modified Amino Acid
				
N(Asn) 110
			
			

				
Annotation dbPTM details
				
N-linked (GlcNAc...).
			
		

		

			

				
Structure Information
			

		
		

			

				
PDB ID Code
				
2AW2
			
			

				
Model
				
-
			
			

				
Chain
				
Y
			
			

				
Position
				
72
			
			

				
SCOP Class
				
g (Small proteins)
			
			

				
MODRES
				
GLYCOSYLATION SITE                       
			
		

		

			

				
Related PTM
			

		
		

			

				
Found in same PDB Chain
				
-
			
			

				
Found in same Uniprot AC
Sort by:
PDB ID Code
  (idpdb-chain_aa)
Sequence position
  (aa_idpdb-chain)
				
2AW2-B_N110	

4RSU-D_N110	4RSU-E_N110	4RSU-J_N110	4RSU-K_N110	
4RSU-L_N110
N110_2AW2-B	N110_4RSU-D	N110_4RSU-E	N110_4RSU-J	
N110_4RSU-K	N110_4RSU-L
			
		
	
		
	

Note: As the images production is automatic, the focus on the PTM site could not be the most optimized.
      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.

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If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
			

1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			

			

			

				

MODRES 2AW2 ASN Y   72  ASN  GLYCOSYLATION SITE                                 
LINK         ND2 ASN Y  72                 C1  NAG D   1     1555   1555  1.45  
ATOM   2987  N   ASN Y  72     -20.451  45.494   3.410  1.00 84.69           N  
ATOM   2988  CA  ASN Y  72     -21.677  44.756   3.121  1.00 84.49           C  
ATOM   2989  C   ASN Y  72     -21.765  43.535   4.038  1.00 83.51           C  
ATOM   2990  O   ASN Y  72     -20.737  43.019   4.477  1.00 83.22           O  
ATOM   2991  CB  ASN Y  72     -21.719  44.339   1.645  1.00 86.43           C  
ATOM   2992  CG  ASN Y  72     -21.999  45.511   0.712  1.00 89.15           C  
ATOM   2993  OD1 ASN Y  72     -22.968  46.247   0.912  1.00 88.78           O  
ATOM   2994  ND2 ASN Y  72     -21.154  45.681  -0.320  1.00 93.34           N  
LINK         O6  NAG D   1                 C1  FUL D   2     1555   1555  1.44  
HETATM 3235  C1  NAG D   1     -21.498  46.799  -1.182  1.00 96.67           C  
HETATM 3236  C2  NAG D   1     -20.269  47.359  -1.901  1.00 98.22           C  
HETATM 3237  C3  NAG D   1     -20.667  48.548  -2.782  1.00 98.78           C  
HETATM 3238  C4  NAG D   1     -21.787  48.143  -3.738  1.00 99.08           C  
HETATM 3239  C5  NAG D   1     -22.939  47.504  -2.949  1.00100.14           C  
HETATM 3240  C6  NAG D   1     -24.086  47.032  -3.853  1.00101.32           C  
HETATM 3241  C7  NAG D   1     -17.962  47.666  -1.196  1.00 99.05           C  
HETATM 3242  C8  NAG D   1     -17.195  48.961  -1.235  1.00 99.46           C  
HETATM 3243  N2  NAG D   1     -19.263  47.754  -0.931  1.00 98.42           N  
HETATM 3244  O3  NAG D   1     -19.567  49.046  -3.516  1.00 98.54           O  
HETATM 3245  O4  NAG D   1     -22.225  49.281  -4.452  1.00 96.36           O  
HETATM 3246  O5  NAG D   1     -22.457  46.425  -2.156  1.00 97.80           O  
HETATM 3247  O6  NAG D   1     -24.132  45.616  -3.862  1.00102.15           O  
HETATM 3248  O7  NAG D   1     -17.398  46.591  -1.407  1.00 97.79           O  
HETATM 3249  C1  FUL D   2     -23.881  45.063  -5.172  1.00103.37           C  
HETATM 3250  C2  FUL D   2     -23.666  43.556  -5.022  1.00104.21           C  
HETATM 3251  O2  FUL D   2     -24.839  42.956  -4.517  1.00104.35           O  
HETATM 3252  C3  FUL D   2     -23.299  42.889  -6.348  1.00105.02           C  
HETATM 3253  O3  FUL D   2     -22.859  41.566  -6.107  1.00104.77           O  
HETATM 3254  C4  FUL D   2     -22.207  43.669  -7.081  1.00104.92           C  
HETATM 3255  O4  FUL D   2     -20.965  43.476  -6.437  1.00104.99           O  
HETATM 3256  C5  FUL D   2     -22.561  45.158  -7.133  1.00104.66           C  
HETATM 3257  C6  FUL D   2     -21.481  45.987  -7.830  1.00104.48           C  
HETATM 3258  O5  FUL D   2     -22.758  45.637  -5.816  1.00103.93           O