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MVPQTETKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQLGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYPIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVCAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTVVGKLEGEREVTLGFVDLMRDDYVEKDRSRGIYFTQDWCSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL
********************************************* ********************************************************* ********************************************** ************************************************* ****************************************************** **************************************************************************.********** ************************** **********************************************************************************************************
MVPQTETKAGAGFKAGVKDYRLTYYTPDYVVRDTDILAAFRMTPQPGVPPEECGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPVPGEDNQYIAYVAYXIDLFEEGSVTNMFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFVGXPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTXDDENVNSQPFMRWRDRFLFVAEAIYKAQAETGEVKGHYLNATAGTCEEMMKRAVXAKELGVPIIMHDYLTGGFTANTSLAIYCRDNGLLLHIHRAMHAVIDRQRNHGIHFRVLAKALRMSGGDHLHSGTAVGKLEGEREVILGFVDLMRDDYVEKDRSRGIYFTQDWXSMPGVMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLAREGGDVIRSACKWSPELAAACEVWKEIKFEFDTIDKL
MMMMMMMMMM___________________________________S_________________________________________________________H______________________________________________H_________________________________________________H______________________________________________________H__________________________________________________________________________S__________S__________________________H__________________________________________________________________________________________________________
CCCCCSCCCTHHHHBCTTCCCCTTCEEEEEEEEECTTCCHHHHHHHHHHHTTTCCSSCCGGGGGSCHHHHCCEEEEEEECTTCSSCEEEEEEECGGGSCTTCHHHHHHHHHSSGGGBTTEEEEEEEEEECCHHHHTTCCCCSSCHHHHHHHHTCCSSCEEECBCSSSSCCCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHHHTCSEEEEEHHHHCHHHHHHHHHHHHHHTCEEEEECTTHHHHHSCSSSEECHHHHHHHHHHHCCSEEECCCSSSSBCCCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEESSCCGGGHHHHHHHHCSSSEEECSHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCCCCCCSSCC
ZZdeddddfklmmmcfkbccdfkbccddddddddehiafklmmmmmmmmmmmbcfbdcfklmmmcfklmpccdfbdcddehiakbccddddddfklpcghiaklmmmmmmmmmmmgmkbmbdcdfbdcddfklmmmpnbjfkbmmlmmmmnopghiacdddddddfbhpafklmmmmmmmmmmnopabdcddfklcbdfklcfklmmmmmmmmmmmmmmmnopacdddddfbdfbfklmmmmmmmmmmnopabdcddfklnopklmmmmmmmmmmnopacdddfehklmmmmpmkgccdfklmmmmmmmnopfbdcebjolambdcdfklmmmmmmmmmmmbdcddfknopabdcdeehpacdddddeehiafklmmmmmmmnomndcdddfklmmmpfnbjklmmmmmmmmmmmmmmmmmnopafklmmmmmmmmmmmmmmklmmmmmmmmmpccddddfbdZZ
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If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali". To avoid the classical Modeller error : 'Number of residues in the alignment and pdb files are different'(see FAQ n°17), the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
1) align this sequence with your sequence to modelised; 2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file; 3) use Modeller to make your models; 4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
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