PTM
			
		
		

			

				
PTM
				
N-linked Glycosylation
			
		

		

			

				
Sequence Information
			

		
		

			

				
Uniprot AC
				
P00797
			
			

				
Organism
				
HUMAN (Human)
			
			

				
Modified Amino Acid
				
N(Asn) 141
			
			

				
Annotation dbPTM details
				
N-linked (GlcNAc...).
N-linked (Glc...)
			
		

		

			

				
Structure Information
			

		
		

			

				
PDB ID Code
				
3GW5
			
			

				
Model
				
-
			
			

				
Chain
				
A
			
			

				
Position
				
75
			
			

				
SCOP Class
				
b (All beta proteins)
			
			

				
MODRES
				
GLYCOSYLATION SITE                       
			
		

		

			

				
Related PTM
			

		
		

			

				
Found in same PDB Chain
				
-
			
			

				
Found in same Uniprot AC
Sort by:
PDB ID Code
  (idpdb-chain_aa)
Sequence position
  (aa_idpdb-chain)
				
2G1N-A_N141	2G1N-B_N141	

2G1O-A_N141	2G1O-B_N141	

2G1R-A_N141	2G1R-B_N141	

2G1S-A_N141	2G1S-B_N141	

2G1Y-A_N141	2G1Y-B_N141	

2G22-A_N141	2G22-B_N141	

2REN-A_N141	

3G6Z-A_N71	3G6Z-A_N141	3G6Z-B_N141	

3G70-A_N141	3G70-B_N141	

3G72-A_N141	3G72-B_N141	

3GW5-B_N141	

3K1W-A_N141	3K1W-B_N141	

3KM4-A_N141	3KM4-B_N141	

3O9L-A_N141	

3OAD-A_N141	3OAD-C_N71	

3OAG-A_N141	3OAG-C_N71	

3OOT-A_N141	3OOT-B_N141	

3OQF-A_N141	3OQF-B_N141	

3OQK-A_N141	3OQK-B_N141	

3Q3T-A_N141	3Q3T-B_N141	

3Q4B-A_N141	

3Q5H-A_N141	

3SFC-A_N141	3SFC-B_N141	

3VCM-A_N141	

3VSW-A_N141	3VSW-B_N141	

3VSX-A_N141	3VSX-B_N141	

3VUC-A_N141	3VUC-B_N141	

3VYD-A_N141	3VYD-B_N141	

3VYE-A_N141	3VYE-B_N141	

3VYF-A_N141	3VYF-B_N141	

4GJ5-A_N141	4GJ5-B_N141	

4GJ6-A_N141	4GJ6-B_N141	

4GJ7-A_N141	4GJ7-B_N141	

4GJ8-A_N141	4GJ8-B_N141	

4GJ9-A_N141	4GJ9-B_N141	

4GJA-A_N141	4GJA-B_N141	

4GJB-A_N141	4GJB-B_N141	

4GJC-A_N141	4GJC-B_N141	

4GJD-A_N141	

4PYV-A_N141	

4Q1N-A_N141	4Q1N-B_N141	

4RYC-A_N141	4RYC-B_N141	

4RYG-A_N141	4RYG-B_N141	

4RZ1-A_N141	4RZ1-B_N141	

4S1G-A_N141	4S1G-B_N141
N71_3G6Z-A	N71_3OAD-C	N71_3OAG-C	

N141_2G1N-A	N141_2G1N-B	N141_2G1O-A	N141_2G1O-B	
N141_2G1R-A	N141_2G1R-B	N141_2G1S-A	N141_2G1S-B	
N141_2G1Y-A	N141_2G1Y-B	N141_2G22-A	N141_2G22-B	
N141_2REN-A	N141_3G6Z-A	N141_3G6Z-B	N141_3G70-A	
N141_3G70-B	N141_3G72-A	N141_3G72-B	N141_3GW5-B	
N141_3K1W-A	N141_3K1W-B	N141_3KM4-A	N141_3KM4-B	
N141_3O9L-A	N141_3OAD-A	N141_3OAG-A	N141_3OOT-A	
N141_3OOT-B	N141_3OQF-A	N141_3OQF-B	N141_3OQK-A	
N141_3OQK-B	N141_3Q3T-A	N141_3Q3T-B	N141_3Q4B-A	
N141_3Q5H-A	N141_3SFC-A	N141_3SFC-B	N141_3VCM-A	
N141_3VSW-A	N141_3VSW-B	N141_3VSX-A	N141_3VSX-B	
N141_3VUC-A	N141_3VUC-B	N141_3VYD-A	N141_3VYD-B	
N141_3VYE-A	N141_3VYE-B	N141_3VYF-A	N141_3VYF-B	
N141_4GJ5-A	N141_4GJ5-B	N141_4GJ6-A	N141_4GJ6-B	
N141_4GJ7-A	N141_4GJ7-B	N141_4GJ8-A	N141_4GJ8-B	
N141_4GJ9-A	N141_4GJ9-B	N141_4GJA-A	N141_4GJA-B	
N141_4GJB-A	N141_4GJB-B	N141_4GJC-A	N141_4GJC-B	
N141_4GJD-A	N141_4PYV-A	N141_4Q1N-A	N141_4Q1N-B	
N141_4RYC-A	N141_4RYC-B	N141_4RYG-A	N141_4RYG-B	
N141_4RZ1-A	N141_4RZ1-B	N141_4S1G-A	N141_4S1G-B
			
		
	
		
	

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      In these cases it is recommended to use the PyMOL script to visualize the PTM site in 3D.

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If you want to use this structure as a template for modelisation with Modeller, you can use the following sequence to build the alignment file "*.ali".

To avoid the classical Modeller error :

			'Number of residues in the alignment and pdb files are different'(see FAQ n°17),

the missing residues, non-classical amino-acids, and sequence gaps have been replaced by a "X" symbol.
			

1) align this sequence with your sequence to modelised;
2) replace the "X" by "-" in the obtained alignement, then build your "*.ali" file;
3) use Modeller to make your models;
4) And finally use the following information found in the PDB to add this PTM in your models (see FAQ n°8 & 9 and this archive of Modeller usage).
			

			

			

				

REMARK 500    ASN A  75      -66.27   -131.34                                   
MODRES 3GW5 ASN A   75  ASN  GLYCOSYLATION SITE                                 
LINK         ND2 ASN A  75                 C1  NAG C   1     1555   1555  1.45  
ATOM    550  N   ASN A  75      44.935  -5.411   9.877  1.00 29.41           N  
ATOM    551  CA  ASN A  75      44.048  -6.350  10.539  1.00 30.32           C  
ATOM    552  C   ASN A  75      44.455  -7.782  10.201  1.00 29.04           C  
ATOM    553  O   ASN A  75      44.893  -8.529  11.070  1.00 29.02           O  
ATOM    554  CB  ASN A  75      42.595  -6.101  10.119  1.00 32.61           C  
ATOM    555  CG  ASN A  75      41.619  -6.966  10.882  1.00 34.31           C  
ATOM    556  OD1 ASN A  75      41.369  -8.106  10.503  1.00 32.71           O  
ATOM    557  ND2 ASN A  75      41.074  -6.431  11.970  1.00 41.05           N  
LINK         O4  NAG C   1                 C1  NAG C   2     1555   1555  1.39  
HETATM 5152  C1  NAG C   1      40.598  -7.290  13.036  1.00 46.54           C  
HETATM 5153  C2  NAG C   1      41.301  -6.932  14.352  1.00 48.06           C  
HETATM 5154  C3  NAG C   1      40.761  -7.799  15.495  1.00 51.71           C  
HETATM 5155  C4  NAG C   1      39.227  -7.757  15.553  1.00 53.85           C  
HETATM 5156  C5  NAG C   1      38.656  -8.104  14.171  1.00 53.57           C  
HETATM 5157  C6  NAG C   1      37.132  -8.066  14.094  1.00 54.57           C  
HETATM 5158  C7  NAG C   1      43.596  -6.258  14.694  1.00 46.44           C  
HETATM 5159  C8  NAG C   1      44.968  -6.772  15.086  1.00 46.70           C  
HETATM 5160  N2  NAG C   1      42.729  -7.144  14.210  1.00 48.13           N  
HETATM 5161  O3  NAG C   1      41.298  -7.348  16.730  1.00 51.26           O  
HETATM 5162  O4  NAG C   1      38.763  -8.716  16.527  1.00 59.48           O  
HETATM 5163  O5  NAG C   1      39.172  -7.185  13.182  1.00 48.39           O  
HETATM 5164  O6  NAG C   1      36.613  -6.787  14.435  1.00 56.82           O  
HETATM 5165  O7  NAG C   1      43.330  -5.067  14.830  1.00 45.68           O  
HETATM 5166  C1  NAG C   2      37.946  -8.251  17.551  1.00 63.56           C  
HETATM 5167  C2  NAG C   2      37.475  -9.437  18.399  1.00 65.12           C  
HETATM 5168  C3  NAG C   2      36.647  -8.937  19.583  1.00 66.09           C  
HETATM 5169  C4  NAG C   2      37.457  -7.917  20.386  1.00 66.41           C  
HETATM 5170  C5  NAG C   2      37.943  -6.792  19.462  1.00 66.41           C  
HETATM 5171  C6  NAG C   2      38.835  -5.789  20.179  1.00 67.59           C  
HETATM 5172  C7  NAG C   2      36.962 -11.649  17.606  1.00 68.26           C  
HETATM 5173  C8  NAG C   2      36.008 -12.551  18.378  1.00 68.19           C  
HETATM 5174  N2  NAG C   2      36.690 -10.348  17.591  1.00 67.10           N  
HETATM 5175  O3  NAG C   2      36.293 -10.032  20.416  1.00 66.94           O  
HETATM 5176  O4  NAG C   2      36.652  -7.376  21.424  1.00 67.58           O  
HETATM 5177  O5  NAG C   2      38.711  -7.342  18.364  1.00 65.07           O  
HETATM 5178  O6  NAG C   2      39.943  -6.427  20.806  1.00 68.27           O  
HETATM 5179  O7  NAG C   2      37.940 -12.134  17.031  1.00 67.69           O