2006

2006

Articles

  • 1 – 2006 ; Henze, Oliver W.; Feast, James ; Gardebien, Fabrice; Jonkheijm, Pascal; Lazzaroni, Roberto; Leclere, Philippe ; Meijer, E. W. (Bert); Albertus, P. H. J.
    Schenning Chiral Amphiphilic Self-Assembled alpha, alpha prime-Linked Quinque-, Sexi-, and Septithiophenes: Synthesis, Stability and Odd-Even Effects
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY ; 128 ; 5923-5929 ; [google scholar] 
  • 2 – 2006 ; Fuchs, P. F. ; Bonvin, A. M. ; Bochicchio, B. ; Pepe, A. ; Alix, A. J. ; Tamburro, A. M.
    Kinetics and thermodynamics of type VIII beta-turn formation: a CD, NMR, and microsecond explicit molecular dynamics study of the GDNP tetrapeptide
    BIOPHYS. J. ; 90 ; 2745–2759 ; [google scholar] 
  • 3 – 2006 ; Joli, F.; Bouchemal N.; Hantz, E. ; Hartmann, B.
    NMRand molecular modeling studies of RNA hairpin containing a G-rich hexaloop
    CRAS ; 9 ; 426-432 ; [google scholar] 
  • 4 – 2006 ; Joli, F. ; Hantz, E. ; Hartmann, B.
    Structure and dynamics of phosphate linkages and sugars in an abasic hexaloop RNA hairpin
    BIOPHYS. J. ; 90 ; 1480–1488 ; [google scholar] 
  • 5 – 2006 ; Tyagi, M.; Gowri, V. S.; Srinivasan, N.; de Brevern, A. G.; Offmann, B.
    A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications
    PROTEINS ; 65 ; (1) 32-9 ; [google scholar] 
  • 6 – 2006 ; Tyagi, M.; Sharma, P.; Swamy, C. S.; Cadet, F.; Srinivasan, N.; de Brevern, A. G.; Offmann, B.
    Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet
    NUCLEIC ACIDS RES ; 34 ; (Web Server issue) W119-23 ; [google scholar] 
  • 7 – 2006 ; Joli, F. ; Bouchemal, N. ; Laigle, A. ; Hartmann, B. ; Hantz, E.
    Solution structure of a purine rich hexaloop hairpin belonging to PGY/MDR1 mRNA and targeted by antisense oligonucleotides
    NUCLEIC ACIDS RES. ; 34 ; 5740–5751 ; [google scholar] 
  • 8 – 2006 ; Gelly, J. C.; de Brevern, A. G.; Hazout, S.
    ‘Protein Peeling’: an approach for splitting a 3D protein structure into compact fragments
    BIOINFORMATICS ; 22 ; (2) 129-33 ; [pmid:16301202] [doi:10.1093/bioinformatics/bti773] [google scholar] 
  • 9 – 2006 ; Gelly, J. C.; Etchebest, C.; Hazout, S.; de Brevern, A. G.
    Protein Peeling 2: a web server to convert protein structures into series of protein units
    NUCLEIC ACIDS RES ; 34 ; (Web Server issue) W75-8 ; [pmid:16845113] [doi:10.1093/nar/gkl292] [google scholar] 
  • 10 – 2006 ; Bornot, A.; de Brevern, A. G.
    Protein beta-turn assignments
    BIOINFORMATION ; 1 ; (5) 153-5 ; [google scholar] 
  • 11 – 2006 ; Benros, C.; de Brevern, A. G.; Etchebest, C.; Hazout, S.
    Assessing a novel approach for predicting local 3D protein structures from sequence
    PROTEINS ; 62 ; (4) 865-80 ; [google scholar] 
  • 12 – 2006 ; Gardebien, F. ; Thangudu, R. R. ; Gontero, B. ; Offmann, B.
    Construction of a 3D model of CP12, a protein linker
    J. MOL. GRAPH. MODEL. ; 25 ; 186–195 ; [google scholar] 
  • 13 – 2006 ; Dairou, J. ; Flatters, D. ; Chaffotte, A. F. ; Pluvinage, B. ; Sim, E. ; Dupret, J. M. ; Rodrigues-Lima, F.
    Insight into the structure of Mesorhizobium loti arylamine N-acetyltransferase 2 (MLNAT2): a biochemical and computational study
    FEBS LETT. ; 580 ; 1780–1788 ; [google scholar] 
  • 14 – 2006 ; Heddi, B. ; Foloppe, N. ; Bouchemal, N. ; Hantz, E. ; Hartmann, B.
    Quantification of DNA BI/BII backbone states in solution. Implications for DNA overall structure and recognition
    J. AM. CHEM. SOC. ; 128 ; 9170–9177 ; [google scholar] 
  • 15 – 2006 ; R. Antoine; M. Broyer; J. Chamot-Rooke; C. Dedonder; C. Desfrançois; P. Dugourd; G. Grégoire; C. Jouvet; D. Onidas; P. Poulain; T. Tabarin; G. van der Rest
    Comparison of the fragmentation pattern induced by collisions, laser excitation and electron capture. Influence of the initial excitation.
    RAPID COMMUNICATIONS IN MASS SPECTROMETRY ; 20 ; (11) 1648–1652 ; [pmid:16637002] [doi:10.1002/rcm.2489] [google scholar] 
  • 16 – 2006 ; P. Poulain; F. Calvo; R. Antoine; M. Broyer; Ph Dugourd
    Performances of Wang-Landau algorithms for continuous systems.
    PHYSICAL REVIEW E ; 73 ; (5 Pt 2) 056704 ; [pmid:16803071] [doi:10.1103/PhysRevE.73.056704] [google scholar] 
  • 17 – 2006 ; Lelandais, G. ; Vincens, P. ; Badel-Chagnon, A. ; Vialette, S. ; Jacq, C. ; Hazout, S.
    Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms
    BIOINFORMATICS ; 22 ; 1359–1366 ; [google scholar] 
  • 18 – 2006 ; Tieleman, D. P.; MacCallum, J. L.; Ash,W. L. ; Kandt, C.; Xu, Z.; Monticelli, L.
    Membrane protein simulations with a united atom lipid and all-atom protein model: side chain transfer free energies and model proteins
    J. PHYS-CONDENS. MAT. ; 18 ; S1221-S1234 ; [google scholar] 
  • 19 – 2006 ; Mátyus, E. ; Monticelli, L. ; Kövér, K. E. ; Xu, Z. ; Blaskó, K. ; Fidy, J. ; Tieleman, D. P.
    Structural investigation of syringomycin-E using molecular dynamics simulation and NMR
    EUR. BIOPHYS. J. ; 35 ; 459–467 ; [google scholar] 
  • 20 – 2006 ; Monticelli, L.; Simoes, C.; Belvisi, L.; Colombo, G.
    Assessing the Influence of Electrostatic Schemes on Molecular Dynamics Simulations of Secondary Structure Forming Peptides
    J. PHYS-CONDENS. MAT. ; 18 ; S329-S345 ; [google scholar] 
  • 21 – 2006 ; Tieleman, D. P. ; Maccallum, J. L. ; Ash, W. L. ; Kandt, C. ; Xu, Z. ; Monticelli, L.
    Membrane protein simulations with a united-atom lipid and all-atom protein model: lipid-protein interactions, side chain transfer free energies and model proteins
    J PHYS CONDENS MATTER ; 18 ; (28) S1221–1234 ; [google scholar] 




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