2009

2009

Articles

  • 1 – 2009 ; Sandhya,Sankaran; Rani, Saane Sudha; Pankaj, Barah; Govind, Madabosse Kande; Offmann, Bernard; Srinivasan,Narayanaswamy; Sowdhamini, R.
    Length variations amongst protein domain superfamilies and consequences on structure and function
    PLOS ONE ; in press ; [google scholar] 
  • 2 – 2009 ; Ramanjooloo, A; Bhaw-Luximon, A; Jhurry, D; Cadet, F
    1H NMR quantitative assessment of lactic acid produced via biofermentation of cane sugar juice
    SPECTROSCOPY LETTERS ; in press ; [google scholar] 
  • 3 – 2009 ; Gonçalves, C. , Ardourel, M-Y.and Decoville, M.; Breuzard, G. ; Midoux, P. ; Hartmann, B. ; Pichon C.
    An optimized extended DNA-B site that enhances plasmid DNA nuclear import and gene expression
    JOURNAL OF GENE MEDICINE ; in press ; [google scholar] 
  • 4 – 2009 ; Benros, C. ; de Brevern, A. G. ; Hazout, S.
    Analyzing the sequence-structure relationship of a library of local structural prototypes
    J. THEOR. BIOL. ; 256 ; 215–226 ; [pmid:18977232] [doi:10.1016/j.jtbi.2008.08.032] [google scholar] 
  • 5 – 2009 ; Bornot, Aurélie; Etchebest, Catherine; de Brevern, Alexandre G.
    A new prediction strategy for long local protein structures using an original description
    PROTEINS ; (in press) [google scholar] 
  • 6 – 2009 ; Doppelt-Azeroual, Olivia; Moriaud, Fabrice; Delfaud, François; de Brevern, Alexandre G.
    Analysis of HSP90 related folds with MED-SuMo classification approach
    DRUG DESIGN, DEVELOPMENT AND THERAPY ; 3 ; 59-72 ; [google scholar] 
  • 7 – 2009 ; Ghozlane, Amine ; Joseph, Agnel Praveen; Bornot, Aurélie; de Brevern, Alexandre G.
    Analysis of protein chameleon sequence characteristics
    BIOINFORMATION ; (in press) [google scholar] 
  • 8 – 2009 ; Florent Calvo; Pierre Poulain
    Transitions between secondary structures in isolated polyalanines
    THE EUROPEAN PHYSICAL JOURNAL D ; 51 ; 15–23 ; [doi:10.1140/epjd/e2008-00096-0] [google scholar] 
  • 9 – 2009 ; Doppelt-Azeroual, O. ; Moriaud, F. ; Adcock, S. A. ; Delfaud, F.
    A review of MED-SuMo applications
    INFECT DISORD DRUG TARGETS ; 9 ; 344–357 ; [pmid:19519487] [google scholar] 
  • 10 – 2009 ; de Brevern, A. G. ; Autin, L. ; Colin, Y. ; Bertrand, O. ; Etchebest, C.
    In silico studies on DARC
    INFECT DISORD DRUG TARGETS ; 9 ; 289–303 ; [pmid:19519487] [google scholar] 
  • 11 – 2009 ; Moriaud, F.; Doppelt-Azeroual, O.; Martin, L.; Oguievetskaia, K.; Koch, K.; Vorotyntsev, A.; Adcock, S.A.; Delfaud F.
    Computational Fragment-Based Approach at PDB Scale by Protein Local Similarity
    J CHEM INF MODEL ; (in press) [google scholar] 
  • 12 – 2009 ; Kandthil, A.J.; Joseph, A.P.; Kannangai, R.; Srinivasan, N.; Abraham, O.C.; Pulimood, S.A.; Sridharan, G.
    Structural basis of drug resistance by genetic variants of HIV-1 clade C protease from India
    AIDS RESEARCH AND HUMAN RETROVIRUSES ; (in press) [google scholar] 
  • 13 – 2009 ; Adrien Saladin; Sébastien Fiorucci; Pierre Poulain; Chantal Prévost; Martin Zacharias
    PTools: an opensource molecular docking library
    BMC STRUCTURAL BIOLOGY ; 9 ; 27 ; [pmid:19409097] [doi:10.1186/1472-6807-9-27] [google scholar] 
  • 14 – 2009 ; de Brevern, A. G.
    New opportunities to fight against infectious diseases and to identify pertinent drug targets with novel methodologies
    INFECT DISORD DRUG TARGETS ; 9 ; 246–247 ; [pmid:19519478] [google scholar] 
  • 15 – 2009 ; Oguievetskaia, K.; Martin-Chanas, L.; Vorotyntsev, A.; Doppelt-Azeroual, O.; Brotel, X.; Adcock, S.A.; de Brevern, Alexandre G.; Delfaud, F.; Moriaud, F.
    Computational Fragment-Based Drug Design to explore the hydrophobic sub-pocket of the Mitotic Kinesin Eg5 allosteric binding site
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN ; in press ; [google scholar] 
  • 16 – 2009 ; Tyagi, Manoj; Bornot, Aurélie; Offmann, Bernard; de Brevern, Alexandre G.
    Analysis of loop boundaries using different local structure assignment methods
    PROTEIN SCIENCE ; in press ; [google scholar] 
  • 17 – 2009 ; Faure, G. ; Bornot, A. ; de Brevern, A. G.
    Analysis of protein contacts into Protein Units
    BIOCHIMIE ; 91 ; 876–887 ; [pmid:19383526] [doi:10.1016/j.biochi.2009.04.008] [google scholar] 
  • 18 – 2009 ; Tyagi, Manoj; Bornot, Aurélie; Offmann, Bernard; de Brevern, Alexandre G.
    Protein short loop prediction in terms of a structural alphabet
    COMPUTATIONAL BIOLOGY AND CHEMISTRY ; in press ; [google scholar] 
  • 19 – 2009 ; Leprivier, G. ; Baillat, D. ; Begue, A. ; Hartmann, B. ; Aumercier, M.
    Ets-1 p51 and p42 isoforms differentially modulate Stromelysin-1 promoter according to induced DNA bend orientation
    NUCLEIC ACIDS RES. ; [pmid:19465391] [doi:10.1093/nar/gkp307 ] [google scholar] 
  • 20 – 2009 ; Ferey N.; · Nelson; ·· Martin, ; ·Picinali, ; ·Bouyer, ; ·Tek, ; ·Bourdot, ·; ·Burkhardt,; ·Katz, ; ·· Ammi,; · · Etchebest, C· ; ·Autin, L
    Multisensory VR interaction for Protein-Docking in the CoRSAIRe project
    SPECIAL ISSUE ON VR IN SCIENTIFIC APPLICATIONS ; [google scholar] 
  • 21 – 2009 ; Lelandais, G. ; Saint-Georges, Y. ; Geneix, C. ; Al-Shikhley, L. ; Dujardin, G. ; Jacq, C.
    Spatio-temporal dynamics of yeast mitochondrial biogenesis: transcriptional and post-transcriptional mRNA oscillatory modules
    PLOS COMPUT. BIOL. ; 5 ; e1000409 ; [google scholar] 
  • 22 – 2009 ; Goldstein, P. ; Zucko, J. ; Vujaklija, D. ; Krisko, A. ; Hranueli, D. ; Long, P. F. ; Etchebest, C. ; Basrak, B. ; Cullum, J.
    Clustering of protein domains for functional and evolutionary studies
    BMC BIOINFORMATICS ; 10 ; 335 ; [google scholar] 
  • 23 – 2009 ; Telenius, J. ; Vattulainen, I. ; Monticelli, L.
    Visualization of complex processes in lipid systems using computer simulations and molecular graphics
    METHODS MOL. BIOL. ; 580 ; 317–338 ; [google scholar] 


  • Incollections

  • 1 – 2009 ; Lèbre, S. ; Lelandais, G.
    Modeling a Regulatory Network Using Temporal Gene Expression Data: Why and How?
    In Automation in Genomics and Proteomics: An Engineering Case-Based Approach: MIT and Harvard interdisciplinary special studies courses ; [google scholar] 
  • 2 – 2009 ; Telenius, J.; Vattulainen, I.; Monticelli, L.
    Visualization of complex processes in lipid systems using computer simulations and molecular graphics
    In Lipidomics – Methods in Molecular Biology ; Humana Press Inc. Totowa, NJ, USA ; [google scholar] 


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