2010

2010

Articles

  • 1 – 2010 ; Niemela, P. S. ; Miettinen, M. S. ; Monticelli, L. ; Hammaren, H. ; Bjelkmar, P. ; Murtola, T. ; Lindahl, E. ; Vattulainen, I.
    Membrane proteins diffuse as dynamic complexes with lipids
    J. AM. CHEM. SOC. ; 132 ; 7574–7575 ; [google scholar] 
  • 2 – 2010 ; Reddy, C. C. ; Rani, S. S. ; Offmann, B. ; Sowdhamini, R.
    Systematic search for putative new domain families in Mycoplasma gallisepticum genome
    BMC RES NOTES ; 3 ; 98 ; [google scholar] 
  • 3 – 2010 ; Joseph, AP; Agarwal, G; Mahajan, S; Gelly, J-C; Swapna, LS; Offmann, B; Cadet, F; Bornot, A; Tyagi, M; Valadié, H; Schneider, B; Etchebest, C; Srinivasan, N; de Brevern, AG
    A short survey on protein blocks
    BIOPHYS REV ; 2 ; (3) 137-145 ; [google scholar] 
  • 4 – 2010 ; Celton, M. ; Malpertuy, A. ; Lelandais, G. ; de Brevern, A. G.
    Comparative analysis of missing value imputation methods to improve clustering and interpretation of microarray experiments
    BMC GENOMICS ; 11 ; 15 ; [google scholar] 
  • 5 – 2010 ; Jallu, V. ; Dusseaux, M. ; Panzer, S. ; Torchet, M. F. ; Hezard, N. ; Goudemand, J. ; de Brevern, A. G. ; Kaplan, C.
    AlphaIIbbeta3 integrin: new allelic variants in Glanzmann thrombasthenia, effects on ITGA2B and ITGB3 mRNA splicing, expression, and structure-function
    HUM. MUTAT. ; 31 ; 237–246 ; [google scholar] 
  • 6 – 2010 ; Abi-Ghanem, J. ; Heddi, B. ; Foloppe, N. ; Hartmann, B.
    DNA structures from phosphate chemical shifts
    NUCLEIC ACIDS RES. ; 38 ; e18 ; [google scholar] 
  • 7 – 2010 ; Heddi, B. ; Oguey, C. ; Lavelle, C. ; Foloppe, N. ; Hartmann, B.
    Intrinsic flexibility of B-DNA: the experimental TRX scale
    NUCLEIC ACIDS RES. ; 38 ; 1034–1047 ; [google scholar] 
  • 8 – 2010 ; Heddi, B. ; Abi-Ghanem, J. ; Lavigne, M. ; Hartmann, B.
    Sequence-dependent DNA flexibility mediates DNase I cleavage
    J. MOL. BIOL. ; 395 ; 123–133 ; [google scholar] 
  • 9 – 2010 ; Pylouster, J. ; Bornot, A. ; Etchebest, C. ; de Brevern, A. G.
    Influence of assignment on the prediction of transmembrane helices in protein structures
    AMINO ACIDS ; [google scholar] 
  • 10 – 2010 ; Doppelt-Azeroual, O. ; Delfaud, F. ; Moriaud, F. ; de Brevern, A. G.
    Fast and automated functional classification with MED-SuMo: an application on purine-binding proteins
    PROTEIN SCI. ; 19 ; 847–867 ; [google scholar] 
  • 11 – 2010 ; Groben, R. ; Kaloudas, D. ; Raines, C. A. ; Offmann, B. ; Maberly, S. C. ; Gontero, B.
    Comparative sequence analysis of CP12, a small protein involved in the formation of a Calvin cycle complex in photosynthetic organisms
    PHOTOSYN. RES. ; 103 ; 183–194 ; [google scholar] 
  • 12 – 2010 ; Poulain, P. ; Gelly, J. C. ; Flatters, D.
    Detection and architecture of small heat shock protein monomers
    PLOS ONE ; 5 ; e9990 ; [google scholar] 
  • 13 – 2010 ; Glowe, JF; Perrin, M; Beljonne, D; Hayes, SC; Gardebien, F; Silva C
    Charge-transfer excitons in strongly coupled organic semiconductors
    PHYSICAL REVIEW B ; [google scholar] 
  • 14 – 2010 ; Smolarek, D. ; Hattab, C. ; Hassanzadeh-Ghassabeh, G. ; Cochet, S. ; Gutierrez, C. ; de Brevern, A. G. ; Udomsangpetch, R. ; Picot, J. ; Grodecka, M. ; Wasniowska, K. ; Muyldermans, S. ; Colin, Y. ; Le Van Kim, C.
    A recombinant dromedary antibody fragment (VHH or nanobody) directed against human Duffy antigen receptor for chemokines
    CELL MOL LIFE SCI ; [google scholar] 
  • 15 – 2010 ; Phan, G. ; Benabdelhak, H. ; Lascombe, M. B. ; Benas, P. ; Rety, S. ; Picard, M. ; Ducruix, A. ; Etchebest, C. ; Broutin, I.
    Structural and dynamical insights into the opening mechanism of P. aeruginosa OprM channel
    STRUCTURE ; 18 ; 507–517 ; [google scholar] 
  • 16 – 2010 ; Smolarek, D. ; Bertrand, O. ; Czerwinski, M. ; Colin, Y. ; Etchebest, C. ; de Brevern, A. G.
    Multiple interests in structural models of DARC transmembrane protein
    TRANSFUS CLIN BIOL ; 17 ; 184–196 ; [google scholar] 
  • 17 – 2010 ; Esque, J. ; Oguey, C. ; de Brevern, A. G.
    A novel evaluation of residue and protein volumes by means of Laguerre tessellation
    J CHEM INF MODEL ; 50 ; 947–960 ; [google scholar] 
  • 18 – 2010 ; Lelandais, G. ; Devaux, F.
    Comparative Functional Genomics of Stress Responses in Yeasts
    OMICS ; [google scholar] 
  • 19 – 2010 ; Monticelli, L. ; Tieleman, D. P. ; Fuchs, P. F.
    Interpretation of (2)H-NMR Experiments on the Orientation of the Transmembrane Helix WALP23 by Computer Simulations
    BIOPHYS. J. ; 99 ; 1455–1464 ; [pmid:20816057] [doi:10.1016/j.bpj.2010.05.039] [google scholar] 
  • 20 – 2010 ; Saladin, A. ; Amourda, C. ; Poulain, P. ; Ferey, N. ; Baaden, M. ; Zacharias, M. ; Delalande, O. ; Prevost, C.
    Modeling the early stage of DNA sequence recognition within RecA nucleoprotein filaments
    NUCLEIC ACIDS RES. ; 38 ; 6313–6323 ; [pmid:20507912] [doi:10.1093/nar/gkq459] [google scholar] 
  • 21 – 2010 ; Arnaud, L. ; Saison, C. ; Helias, V. ; Lucien, N. ; Steschenko, D. ; Giarratana, M. C. ; Prehu, C. ; Foliguet, B. ; Montout, L. ; de Brevern, A. G. ; Francina, A. ; Ripoche, P. ; Fenneteau, O. ; Da Costa, L. ; Pey
    A Dominant Mutation in the Gene Encoding the Erythroid Transcription Factor KLF1 Causes a Congenital Dyserythropoietic Anemia
    AM. J. HUM. GENET. ; 87 ; 721–727 ; [google scholar] 
  • 22 – 2010 ; de Brevern, A. G.
    Observer avec un nouvel oeil la structure des protéines et leur flexibilité.
    REGARD SUR LA BIOCHIMIE ; (4) 3 ; [google scholar] 
  • 23 – 2010 ; Gueroult, M. ; Picot, D. ; Abi-Ghanem, J. ; Hartmann, B. ; Baaden, M.
    How cations can assist DNase I in DNA binding and hydrolysis
    PLOS COMPUT. BIOL. ; 6 ; e1001000 ; [google scholar] 
  • 24 – 2010 ; Delalande, O. ; Ferey, N. ; Laurent, B. ; Gueroult, M. ; Hartmann, B. ; Baaden, M.
    Multi-resolution approach for interactively locating functionally linked ion binding sites by steering small molecules into electrostatic potential maps using a haptic device
    PAC SYMP BIOCOMPUT ; 205–215 ; [google scholar] 
  • 25 – 2010 ; Oguey, C. ; Foloppe, N. ; Hartmann, B.
    Understanding the sequence-dependence of DNA groove dimensions: implications for DNA interactions
    PLOS ONE ; 5 ; e15931 ; [google scholar] 
  • 26 – 2010 ; Cohen, D. ; Bogeat-Triboulot, M. B. ; Tisserant, E. ; Balzergue, S. ; Martin-Magniette, M. L. ; Lelandais, G. ; Ningre, N. ; Renou, J. P. ; Tamby, J. P. ; Le Thiec, D. ; Hummel, I.
    Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes
    BMC GENOMICS ; 11 ; 630 ; [google scholar] 
  • 27 – 2010 ; Devaux, F. ; Lelandais, G. ; Garcia, M. ; Goussard, S. ; Jacq, C.
    Posttranscriptional control of mitochondrial biogenesis: spatio-temporal regulation of the protein import process
    FEBS LETT. ; 584 ; 4273–4279 ; [google scholar] 
  • 28 – 2010 ; Lebre, S. ; Becq, J. ; Devaux, F. ; Stumpf, M. P. ; Lelandais, G.
    Statistical inference of the time-varying structure of gene-regulation networks
    BMC SYST BIOL ; 4 ; 130 ; [google scholar] 
  • 29 – 2010 ; Javanainen, M. ; Monticelli, L. ; Bernardino de la Serna, J. ; Vattulainen, I.
    Free volume theory applied to lateral diffusion in Langmuir monolayers: atomistic simulations for a protein-free model of lung surfactant
    LANGMUIR ; 26 ; (19) 15436–15444 ; [google scholar] 


  • Incollections

  • 1 – 2010 ; Kandt, C. ; Monticelli, L.
    Membrane protein dynamics from femtoseconds to seconds
    METHODS MOL. BIOL. ; 654 ; 423–440 ; [google scholar] 
  • 2 – 2010 ; Etchebest, C. ; Debret, G.
    Critical review of general guidelines for membrane proteins model building and analysis
    METHODS MOL. BIOL. ; 654 ; 363–385 ; [google scholar] 
  • 3 – 2010 ; Joseph, AP; Bornot, A; de Brevern, AG
    Local Structure Alphabets
    Protein Structure Prediction ; Huzefa Rangwala and George Karypis eds., Wiley ; [google scholar] 
  • 4 – 2010 ; Argwal ,G; Dinesh, DC; Srinivasan, N; de Brevern, AG
    Characterizatrion of conformational patterns in active and inactive forms of kinases using Protein Blocks approach
    Computational Intelligence and Pattern Analysis in Biological Informatics ; U. Maulik, S. Bandyopadhyay and J.T.L. Wang eds., Wiley2 ; [google scholar] 
  • 5 – 2010 ; de Brevern, A. G.
    3D structural models of transmembrane proteins
    METHODS MOL. BIOL. ; 654 ; 387–401 ; [google scholar] 
  • 6 – 2010 ; Fuchs, P. F.
    Molecular dynamics of membrane peptides and proteins: principles and comparison to experimental data
    METHODS MOL. BIOL. ; 654 ; 403–421 ; [google scholar] 
  • 7 – 2010 ; J. F. Glowe; M. Perrin; D. Beljonne; L. Karsenti, S. C. Hayes, F. Gardebien, C. Silva
    Charge Transfer Excitons in Supramolecular Semiconductor Nanostructures
    Functional Supramolecular Architectures: for Organic Electronics and Nanotechnology ; Wiley-VCH Verlag GmbH & Co ; [google scholar] 


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