Cytoplasmically open conformation of bacteriorhodopsin
Organism: Halobacterium salinarum
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1FBK
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 6
Sequence positions:
A: 46-58|81-94|111-124|136-150|176-190|206-220
Tilt angles:
A - Segment: 46-58 - Tilt: 11.3°
A - Segment: 81-94 - Tilt: 17.9°
A - Segment: 111-124 - Tilt: 6.5°
A - Segment: 136-150 - Tilt: 18.2°
A - Segment: 176-190 - Tilt: 19.2°
A - Segment: 206-220 - Tilt: 20.7°
Structural assessment:
MAIDEN score = -32.4929
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]