Cytoplasmically open conformation of bacteriorhodopsin
Organism: Halobacterium salinarum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1FBK
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 7
Sequence positions:
A: 12-31|37-51|79-93|105-122|129-145|175-189|200-218
Tilt angles:
A - Segment: 12-31 - Tilt: 52.8°
A - Segment: 37-51 - Tilt: 37.7°
A - Segment: 79-93 - Tilt: 28.5°
A - Segment: 105-122 - Tilt: 40.5°
A - Segment: 129-145 - Tilt: 41.0°
A - Segment: 175-189 - Tilt: 35.6°
A - Segment: 200-218 - Tilt: 49.4°
Structural assessment:
MAIDEN score = -31.3177
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]