Bovine rhodopsin in a trigonal crystal form
Organism: Bos taurus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00001
PDB ID: 1GZM
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.8 Å
Number of TM segments = 14
Sequence positions:
A: 35-52|78-99|111-129|157-170|204-221|258-274|286-301
B: 34-52|79-99|109-129|157-170|204-220|259-274|286-301
Tilt angles:
A - Segment: 35-52 - Tilt: 48.7°
A - Segment: 78-99 - Tilt: 49.7°
A - Segment: 111-129 - Tilt: 40.0°
A - Segment: 157-170 - Tilt: 6.0°
A - Segment: 204-221 - Tilt: 24.7°
A - Segment: 258-274 - Tilt: 18.3°
A - Segment: 286-301 - Tilt: 26.9°
B - Segment: 34-52 - Tilt: 41.2°
B - Segment: 79-99 - Tilt: 48.2°
B - Segment: 109-129 - Tilt: 46.7°
B - Segment: 157-170 - Tilt: 6.2°
B - Segment: 204-220 - Tilt: 21.4°
B - Segment: 259-274 - Tilt: 10.3°
B - Segment: 286-301 - Tilt: 27.1°
Structural assessment:
MAIDEN score = -139.8596
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]