Bovine rhodopsin in a trigonal crystal form
Organism: Bos taurus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00001
PDB ID: 1GZM
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 22.0 Å
Number of TM segments = 14
Sequence positions:
A: 35-52|81-99|109-127|157-171|203-218|259-274|286-300
B: 363-381|407-428|441-459|483-498|534-550|587-602|615-630
Tilt angles:
A - Segment: 35-52 - Tilt: 44.0°
A - Segment: 81-99 - Tilt: 44.6°
A - Segment: 109-127 - Tilt: 36.2°
A - Segment: 157-171 - Tilt: 10.3°
A - Segment: 203-218 - Tilt: 17.2°
A - Segment: 259-274 - Tilt: 10.8°
A - Segment: 286-300 - Tilt: 30.7°
B - Segment: 363-381 - Tilt: 45.3°
B - Segment: 407-428 - Tilt: 51.4°
B - Segment: 441-459 - Tilt: 43.0°
B - Segment: 483-498 - Tilt: 20.4°
B - Segment: 534-550 - Tilt: 17.0°
B - Segment: 587-602 - Tilt: 15.1°
B - Segment: 615-630 - Tilt: 31.2°
Structural assessment:
MAIDEN score = -95.9529
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]