Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex
Organism: Natronomonas pharaonis
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1H2S
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.5 Å
Number of TM segments = 8
Sequence positions:
A: 6-23|38-55|69-85|98-115|124-140|165-181|192-209
B: 64-80
Tilt angles:
A - Segment: 6-23 - Tilt: 26.3°
A - Segment: 38-55 - Tilt: 20.3°
A - Segment: 69-85 - Tilt: 15.7°
A - Segment: 98-115 - Tilt: 16.1°
A - Segment: 124-140 - Tilt: 6.5°
A - Segment: 165-181 - Tilt: 1.6°
A - Segment: 192-209 - Tilt: 24.3°
B - Segment: 64-80 - Tilt: 18.5°
Structural assessment:
MAIDEN score = -102.5338
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]