Molecular basis of transmenbrane signalling by sensory rhodopsin II-transducer complex
Organism: Natronomonas pharaonis
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1H2S
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.7 Å
Number of TM segments = 8
Sequence positions:
A: 2-21|38-59|68-85|98-117|122-140|164-185|187-209
B: 263-283
Tilt angles:
A - Segment: 2-21 - Tilt: 16.5°
A - Segment: 38-59 - Tilt: 8.7°
A - Segment: 68-85 - Tilt: 15.5°
A - Segment: 98-117 - Tilt: 14.2°
A - Segment: 122-140 - Tilt: 3.6°
A - Segment: 164-185 - Tilt: 9.9°
A - Segment: 187-209 - Tilt: 28.6°
B - Segment: 263-283 - Tilt: 16.8°
Structural assessment:
MAIDEN score = -66.7538
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]