Sensory rhodopsin II
Organism: Natronomonas pharaonis
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1H68
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 7
Sequence positions:
A: 9-24|37-51|72-86|98-112|125-138|167-180|192-209
Tilt angles:
A - Segment: 9-24 - Tilt: 42.3°
A - Segment: 37-51 - Tilt: 32.2°
A - Segment: 72-86 - Tilt: 25.3°
A - Segment: 98-112 - Tilt: 41.0°
A - Segment: 125-138 - Tilt: 24.4°
A - Segment: 167-180 - Tilt: 40.5°
A - Segment: 192-209 - Tilt: 47.4°
Structural assessment:
MAIDEN score = -63.4845
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]