Sensory rhodopsin II
Organism: Natronomonas pharaonis
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1H68
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 7
Sequence positions:
A: 8-26|34-48|71-85|94-111|124-137|165-179|191-208
Tilt angles:
A - Segment: 8-26 - Tilt: 47.8°
A - Segment: 34-48 - Tilt: 29.7°
A - Segment: 71-85 - Tilt: 22.8°
A - Segment: 94-111 - Tilt: 44.6°
A - Segment: 124-137 - Tilt: 23.3°
A - Segment: 165-179 - Tilt: 33.8°
A - Segment: 191-208 - Tilt: 45.7°
Structural assessment:
MAIDEN score = -51.5342
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]