Ground State of Bacteriorhodopsin
Organism: Halobacterium salinarum
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1IW6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.0 Å
Number of TM segments = 5
Sequence positions:
A: 8-26|46-67|78-93|111-128|131-149
Tilt angles:
A - Segment: 8-26 - Tilt: 21.3°
A - Segment: 46-67 - Tilt: 14.6°
A - Segment: 78-93 - Tilt: 4.4°
A - Segment: 111-128 - Tilt: 3.6°
A - Segment: 131-149 - Tilt: 11.9°
Structural assessment:
MAIDEN score = -29.3934
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]