Ground State of Bacteriorhodopsin
Organism: Halobacterium salinarum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1IW6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 7
Sequence positions:
A: 11-31|35-53|77-92|104-122|127-145|173-196|199-220
Tilt angles:
A - Segment: 11-31 - Tilt: 48.7°
A - Segment: 35-53 - Tilt: 32.1°
A - Segment: 77-92 - Tilt: 19.8°
A - Segment: 104-122 - Tilt: 34.3°
A - Segment: 127-145 - Tilt: 31.0°
A - Segment: 173-196 - Tilt: 28.4°
A - Segment: 199-220 - Tilt: 50.3°
Structural assessment:
MAIDEN score = -26.2071
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]