Cytochrome c oxidase from Rhodobactor sphaeroides (Wild Type)
Organism: Rhodobacter sphaeroides
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00115
PDB ID: 1M56
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 23.1 Å
Number of TM segments = 22
Sequence positions:
A: 30-46|102-120|138-155|192-206|231-248|280-298|318-331|350-367|379-399|419-437|451-466|501-517
C: 17-32|41-56|84-99|131-147|169-183|205-221|245-260
B: 64-81|100-114
D: 32-48
Tilt angles:
A - Segment: 30-46 - Tilt: 27.9°
A - Segment: 102-120 - Tilt: 16.6°
A - Segment: 138-155 - Tilt: 28.5°
A - Segment: 192-206 - Tilt: 29.5°
A - Segment: 231-248 - Tilt: 45.9°
A - Segment: 280-298 - Tilt: 42.2°
A - Segment: 318-331 - Tilt: 20.9°
A - Segment: 350-367 - Tilt: 46.8°
A - Segment: 379-399 - Tilt: 49.9°
A - Segment: 419-437 - Tilt: 32.9°
A - Segment: 451-466 - Tilt: 25.4°
A - Segment: 501-517 - Tilt: 29.7°
C - Segment: 17-32 - Tilt: 10.7°
C - Segment: 41-56 - Tilt: 16.0°
C - Segment: 84-99 - Tilt: 15.3°
C - Segment: 131-147 - Tilt: 20.9°
C - Segment: 169-183 - Tilt: 10.4°
C - Segment: 205-221 - Tilt: 35.7°
C - Segment: 245-260 - Tilt: 23.8°
B - Segment: 64-81 - Tilt: 40.3°
B - Segment: 100-114 - Tilt: 15.1°
D - Segment: 32-48 - Tilt: 32.1°
Structural assessment:
MAIDEN score = -171.7119
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]