Cytochrome c oxidase from Rhodobactor sphaeroides (Wild Type)
Organism: Rhodobacter sphaeroides
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00115
PDB ID: 1M56
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 33.0 Å
Number of TM segments = 22
Sequence positions:
A: 16-40|84-107|124-147|172-196|217-242|261-286|301-322|331-355|366-390|401-424|438-460|480-503
C: 822-842|845-865|887-908|935-957|971-992|1007-1031|1045-1070
B: 576-599|616-637
D: 1091-1113
Tilt angles:
A - Segment: 16-40 - Tilt: 35.8°
A - Segment: 84-107 - Tilt: 21.4°
A - Segment: 124-147 - Tilt: 19.9°
A - Segment: 172-196 - Tilt: 35.0°
A - Segment: 217-242 - Tilt: 37.1°
A - Segment: 261-286 - Tilt: 34.2°
A - Segment: 301-322 - Tilt: 15.8°
A - Segment: 331-355 - Tilt: 34.5°
A - Segment: 366-390 - Tilt: 37.9°
A - Segment: 401-424 - Tilt: 14.6°
A - Segment: 438-460 - Tilt: 25.6°
A - Segment: 480-503 - Tilt: 30.9°
C - Segment: 822-842 - Tilt: 7.7°
C - Segment: 845-865 - Tilt: 23.6°
C - Segment: 887-908 - Tilt: 15.0°
C - Segment: 935-957 - Tilt: 8.8°
C - Segment: 971-992 - Tilt: 13.3°
C - Segment: 1007-1031 - Tilt: 30.1°
C - Segment: 1045-1070 - Tilt: 28.6°
B - Segment: 576-599 - Tilt: 23.6°
B - Segment: 616-637 - Tilt: 9.3°
D - Segment: 1091-1113 - Tilt: 17.4°
Structural assessment:
MAIDEN score = -218.1407
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]