Bacteriorhodopsin crystallized from bicells
Organism: Halobacterium salinarum
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1PY6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.5 Å
Number of TM segments = 5
Sequence positions:
A: 9-33|42-69|77-97|170-199|201-226
Tilt angles:
A - Segment: 9-33 - Tilt: 28.0°
A - Segment: 42-69 - Tilt: 32.3°
A - Segment: 77-97 - Tilt: 17.5°
A - Segment: 170-199 - Tilt: 19.9°
A - Segment: 201-226 - Tilt: 25.2°
Structural assessment:
MAIDEN score = -34.6049
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]