Bacteriorhodopsin crystallized from bicells
Organism: Halobacterium salinarum
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam ID: PF01036
PDB code: 1PY6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.2 Å
Number of TM segments = 7
Sequence positions:
A: 11-33|41-66|78-100|106-128|133-158|168-190|204-226
Tilt angles:
A - Segment: 11-33 - Tilt: 11.7°
A - Segment: 41-66 - Tilt: 16.8°
A - Segment: 78-100 - Tilt: 21.7°
A - Segment: 106-128 - Tilt: 11.5°
A - Segment: 133-158 - Tilt: 31.8°
A - Segment: 168-190 - Tilt: 23.5°
A - Segment: 204-226 - Tilt: 20.4°
Structural assessment:
MAIDEN score = -94.8859
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]