Bacteriorhodopsin crystallized from bicells
Organism: Halobacterium salinarum
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1PY6
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 35.1 Å
Number of TM segments = 7
Sequence positions:
A: 6-29|36-63|74-95|102-124|126-153|164-191|199-222
Tilt angles:
A - Segment: 6-29 - Tilt: 18.4°
A - Segment: 36-63 - Tilt: 26.5°
A - Segment: 74-95 - Tilt: 17.2°
A - Segment: 102-124 - Tilt: 10.7°
A - Segment: 126-153 - Tilt: 33.8°
A - Segment: 164-191 - Tilt: 27.3°
A - Segment: 199-222 - Tilt: 18.0°
Structural assessment:
MAIDEN score = -36.2006
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]