Paracoccus denitrificans four-subunit cytochrome c oxidase in the completely oxidized state complexed with an antibody fv fragment
Organism: Paracoccus denitrificans
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00115
PDB ID: 1QLE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.3 Å
Number of TM segments = 22
Sequence positions:
A: 34-52|92-111|132-150|180-198|223-244|269-290|310-326|338-359|371-395|408-428|443-462|489-509
C: 16-34|47-63|91-109|137-155|176-193|208-228|252-271
B: 37-58|77-94
D: 30-48
Tilt angles:
A - Segment: 34-52 - Tilt: 26.2°
A - Segment: 92-111 - Tilt: 10.5°
A - Segment: 132-150 - Tilt: 21.1°
A - Segment: 180-198 - Tilt: 26.5°
A - Segment: 223-244 - Tilt: 39.9°
A - Segment: 269-290 - Tilt: 42.8°
A - Segment: 310-326 - Tilt: 17.3°
A - Segment: 338-359 - Tilt: 41.3°
A - Segment: 371-395 - Tilt: 46.3°
A - Segment: 408-428 - Tilt: 27.4°
A - Segment: 443-462 - Tilt: 27.9°
A - Segment: 489-509 - Tilt: 32.0°
C - Segment: 16-34 - Tilt: 13.5°
C - Segment: 47-63 - Tilt: 17.1°
C - Segment: 91-109 - Tilt: 18.4°
C - Segment: 137-155 - Tilt: 13.4°
C - Segment: 176-193 - Tilt: 13.2°
C - Segment: 208-228 - Tilt: 30.8°
C - Segment: 252-271 - Tilt: 24.8°
B - Segment: 37-58 - Tilt: 36.1°
B - Segment: 77-94 - Tilt: 20.2°
D - Segment: 30-48 - Tilt: 24.6°
Structural assessment:
MAIDEN score = -184.5025
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]