Paracoccus denitrificans four-subunit cytochrome c oxidase in the completely oxidized state complexed with an antibody fv fragment
Organism: Paracoccus denitrificans
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00115
PDB ID: 1QLE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.6 Å
Number of TM segments = 22
Sequence positions:
A: 15-35|76-95|114-133|164-182|207-227|253-274|291-309|323-343|355-378|392-412|427-445|473-493
C: 805-823|837-853|879-897|927-945|964-981|1000-1019|1040-1060
B: 575-596|614-632
D: 1086-1105
Tilt angles:
A - Segment: 15-35 - Tilt: 32.2°
A - Segment: 76-95 - Tilt: 10.9°
A - Segment: 114-133 - Tilt: 25.6°
A - Segment: 164-182 - Tilt: 26.4°
A - Segment: 207-227 - Tilt: 41.4°
A - Segment: 253-274 - Tilt: 41.6°
A - Segment: 291-309 - Tilt: 16.3°
A - Segment: 323-343 - Tilt: 43.8°
A - Segment: 355-378 - Tilt: 45.6°
A - Segment: 392-412 - Tilt: 26.3°
A - Segment: 427-445 - Tilt: 33.5°
A - Segment: 473-493 - Tilt: 30.2°
C - Segment: 805-823 - Tilt: 8.6°
C - Segment: 837-853 - Tilt: 16.2°
C - Segment: 879-897 - Tilt: 13.7°
C - Segment: 927-945 - Tilt: 12.6°
C - Segment: 964-981 - Tilt: 9.8°
C - Segment: 1000-1019 - Tilt: 21.4°
C - Segment: 1040-1060 - Tilt: 30.9°
B - Segment: 575-596 - Tilt: 34.4°
B - Segment: 614-632 - Tilt: 12.4°
D - Segment: 1086-1105 - Tilt: 18.0°
Structural assessment:
MAIDEN score = -148.8878
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]