Protein conducting channel
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 1RH5
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.5 Å
Number of TM segments = 10
Sequence positions:
A: 30-46|56-94|110-129|138-161|168-189|210-229|254-276|314-334
C: 31-50
B: 33-62
Tilt angles:
A - Segment: 30-46 - Tilt: 32.9°
A - Segment: 56-94 - Tilt: 37.5°
A - Segment: 110-129 - Tilt: 9.6°
A - Segment: 138-161 - Tilt: 37.7°
A - Segment: 168-189 - Tilt: 35.1°
A - Segment: 210-229 - Tilt: 29.2°
A - Segment: 254-276 - Tilt: 37.8°
A - Segment: 314-334 - Tilt: 25.9°
C - Segment: 31-50 - Tilt: 14.4°
B - Segment: 33-62 - Tilt: 54.8°
Structural assessment:
MAIDEN score = -87.7744
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]