Protein conducting channel
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 1RH5
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.6 Å
Number of TM segments = 10
Sequence positions:
A: 29-45|55-86|111-127|137-157|168-187|210-226|255-275|312-329
C: 479-496
B: 436-459
Tilt angles:
A - Segment: 29-45 - Tilt: 36.3°
A - Segment: 55-86 - Tilt: 34.7°
A - Segment: 111-127 - Tilt: 6.8°
A - Segment: 137-157 - Tilt: 37.9°
A - Segment: 168-187 - Tilt: 38.7°
A - Segment: 210-226 - Tilt: 12.5°
A - Segment: 255-275 - Tilt: 45.6°
A - Segment: 312-329 - Tilt: 27.9°
C - Segment: 479-496 - Tilt: 20.1°
B - Segment: 436-459 - Tilt: 47.0°
Structural assessment:
MAIDEN score = -43.0452
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]