Protein conducting channel
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00344
PDB ID: 1RHZ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 28-40|73-91|109-122|148-161|167-183|216-228|255-268|318-333|379-393|399-414
C: 28-42
B: 33-54
Tilt angles:
A - Segment: 28-40 - Tilt: 27.8°
A - Segment: 73-91 - Tilt: 53.3°
A - Segment: 109-122 - Tilt: 12.0°
A - Segment: 148-161 - Tilt: 36.7°
A - Segment: 167-183 - Tilt: 30.0°
A - Segment: 216-228 - Tilt: 14.2°
A - Segment: 255-268 - Tilt: 35.9°
A - Segment: 318-333 - Tilt: 34.0°
A - Segment: 379-393 - Tilt: 30.7°
A - Segment: 399-414 - Tilt: 15.2°
C - Segment: 28-42 - Tilt: 26.4°
B - Segment: 33-54 - Tilt: 57.4°
Structural assessment:
MAIDEN score = -90.0930
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]