Protein conducting channel
Organism: Methanococcus jannaschii
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00344
PDB ID: 1RHZ
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
A: 26-39|72-90|108-121|146-160|166-179|215-227|251-267|318-332|378-391|398-413
C: 506-519
B: 464-485
Tilt angles:
A - Segment: 26-39 - Tilt: 24.1°
A - Segment: 72-90 - Tilt: 55.0°
A - Segment: 108-121 - Tilt: 8.1°
A - Segment: 146-160 - Tilt: 28.2°
A - Segment: 166-179 - Tilt: 21.0°
A - Segment: 215-227 - Tilt: 16.8°
A - Segment: 251-267 - Tilt: 46.0°
A - Segment: 318-332 - Tilt: 29.3°
A - Segment: 378-391 - Tilt: 36.6°
A - Segment: 398-413 - Tilt: 16.3°
C - Segment: 506-519 - Tilt: 15.1°
B - Segment: 464-485 - Tilt: 57.7°
Structural assessment:
MAIDEN score = -79.1832
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]