Translocator domain of autotransporter nalp from Neisseria meningitidis
Organism: Neisseria meningitidis
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF03797
PDB ID: 1UYN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 13
Sequence positions:
X: 796-810|826-832|839-847|858-872|877-894|896-913|927-941|949-958|985-992|1004-1009|1042-1047|1063-1068|1071-1076
Tilt angles:
X - Segment: 796-810 - Tilt: 48.4°
X - Segment: 826-832 - Tilt: 30.7°
X - Segment: 839-847 - Tilt: 46.0°
X - Segment: 858-872 - Tilt: 67.8°
X - Segment: 877-894 - Tilt: 69.3°
X - Segment: 896-913 - Tilt: 71.2°
X - Segment: 927-941 - Tilt: 67.2°
X - Segment: 949-958 - Tilt: 50.5°
X - Segment: 985-992 - Tilt: 32.4°
X - Segment: 1004-1009 - Tilt: 20.8°
X - Segment: 1042-1047 - Tilt: 2.3°
X - Segment: 1063-1068 - Tilt: 15.2°
X - Segment: 1071-1076 - Tilt: 20.0°
Structural assessment:
MAIDEN score = -23.0434
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]