Translocator domain of autotransporter nalp from Neisseria meningitidis
Organism: Neisseria meningitidis
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF03797
PDB ID: 1UYN
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 11
Sequence positions:
X: 15-30|35-42|60-67|74-81|98-105|113-122|145-157|159-171|194-209|211-224|270-278
Tilt angles:
X - Segment: 15-30 - Tilt: 18.5°
X - Segment: 35-42 - Tilt: 20.2°
X - Segment: 60-67 - Tilt: 10.3°
X - Segment: 74-81 - Tilt: 24.2°
X - Segment: 98-105 - Tilt: 31.8°
X - Segment: 113-122 - Tilt: 40.7°
X - Segment: 145-157 - Tilt: 55.5°
X - Segment: 159-171 - Tilt: 58.1°
X - Segment: 194-209 - Tilt: 59.7°
X - Segment: 211-224 - Tilt: 61.2°
X - Segment: 270-278 - Tilt: 32.2°
Structural assessment:
MAIDEN score = 376.7906
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]