Translocator domain of autotransporter nalp from Neisseria meningitidis
Organism: Neisseria meningitidis
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF03797
PDB ID: 1UYO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 12
Sequence positions:
X: 797-809|824-829|864-869|880-887|901-909|927-937|951-961|982-992|1003-1012|1042-1048|1061-1067|1073-1078
Tilt angles:
X - Segment: 797-809 - Tilt: 27.2°
X - Segment: 824-829 - Tilt: 17.4°
X - Segment: 864-869 - Tilt: 25.1°
X - Segment: 880-887 - Tilt: 35.0°
X - Segment: 901-909 - Tilt: 49.6°
X - Segment: 927-937 - Tilt: 56.7°
X - Segment: 951-961 - Tilt: 61.6°
X - Segment: 982-992 - Tilt: 57.6°
X - Segment: 1003-1012 - Tilt: 50.5°
X - Segment: 1042-1048 - Tilt: 34.5°
X - Segment: 1061-1067 - Tilt: 28.4°
X - Segment: 1073-1078 - Tilt: 24.0°
Structural assessment:
MAIDEN score = -9.5006
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]