Translocator domain of autotransporter nalp from Neisseria meningitidis
Organism: Neisseria meningitidis
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF03797
PDB ID: 1UYO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 13
Sequence positions:
X: 9-26|40-46|50-56|76-84|88-104|107-124|135-153|157-169|193-200|212-217|235-240|256-261|264-269
Tilt angles:
X - Segment: 9-26 - Tilt: 47.2°
X - Segment: 40-46 - Tilt: 27.4°
X - Segment: 50-56 - Tilt: 36.9°
X - Segment: 76-84 - Tilt: 48.6°
X - Segment: 88-104 - Tilt: 70.7°
X - Segment: 107-124 - Tilt: 70.3°
X - Segment: 135-153 - Tilt: 69.8°
X - Segment: 157-169 - Tilt: 63.2°
X - Segment: 193-200 - Tilt: 40.8°
X - Segment: 212-217 - Tilt: 28.9°
X - Segment: 235-240 - Tilt: 10.8°
X - Segment: 256-261 - Tilt: 12.6°
X - Segment: 264-269 - Tilt: 15.7°
Structural assessment:
MAIDEN score = 405.1443
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]