Archaerhodopsin-2
Organism: Halobacterium sp.
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1VGO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 34.0 Å
Number of TM segments = 5
Sequence positions:
B: 13-36|46-70|83-103|110-133|137-159
Tilt angles:
B - Segment: 13-36 - Tilt: 27.5°
B - Segment: 46-70 - Tilt: 4.7°
B - Segment: 83-103 - Tilt: 9.7°
B - Segment: 110-133 - Tilt: 17.9°
B - Segment: 137-159 - Tilt: 5.8°
Structural assessment:
MAIDEN score = -52.4541
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]