Archaerhodopsin-2
Organism: Halobacterium sp.
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF01036
PDB ID: 1VGO
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 31.8 Å
Number of TM segments = 7
Sequence positions:
B: 242-262|276-298|312-331|340-361|366-387|407-430|432-456
Tilt angles:
B - Segment: 242-262 - Tilt: 24.7°
B - Segment: 276-298 - Tilt: 11.6°
B - Segment: 312-331 - Tilt: 6.3°
B - Segment: 340-361 - Tilt: 14.5°
B - Segment: 366-387 - Tilt: 10.4°
B - Segment: 407-430 - Tilt: 14.5°
B - Segment: 432-456 - Tilt: 25.0°
Structural assessment:
MAIDEN score = -50.5357
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]