Outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 resolution
Organism: Vibrio cholerae
Model: Experimental
Representation: Atomistic
Type: β-sheet
Pfam Acc: PF02321
PDB ID: 1YC9
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.0 Å
Number of TM segments = 4
Sequence positions:
A: 111-123|144-157|324-336|353-366
Tilt angles:
A - Segment: 111-123 - Tilt: 47.3°
A - Segment: 144-157 - Tilt: 56.0°
A - Segment: 324-336 - Tilt: 48.2°
A - Segment: 353-366 - Tilt: 51.6°
Structural assessment:
MAIDEN score = -5.4301
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]