Outer membrane protein VceC from the bacterial pathogen Vibrio cholerae at 1.8 resolution
Organism: Vibrio cholerae
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF02321
PDB ID: 1YC9
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 4
Sequence positions:
A: 26-59|83-134|226-247|317-350
Tilt angles:
A - Segment: 26-59 - Tilt: 69.4°
A - Segment: 83-134 - Tilt: 76.6°
A - Segment: 226-247 - Tilt: 64.7°
A - Segment: 317-350 - Tilt: 67.7°
Structural assessment:
MAIDEN score = 25.7040
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]