Rotor ring of F-type Na⁺-ATPase from Ilyobacter tartaricus
Organism: Ilyobacter tartaricus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00137
PDB ID: 1YCE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 22
Sequence positions:
A: 20-44|49-75
C: 19-44|50-76
B: 19-44|49-76
E: 19-43|50-76
D: 19-44|50-76
G: 19-44|49-76
F: 19-44|50-76
I: 20-44|49-74
H: 20-44|49-75
K: 20-44|49-74
J: 20-44|49-74
Tilt angles:
A - Segment: 20-44 - Tilt: 19.0°
A - Segment: 49-75 - Tilt: 10.0°
C - Segment: 19-44 - Tilt: 11.9°
C - Segment: 50-76 - Tilt: 9.4°
B - Segment: 19-44 - Tilt: 13.0°
B - Segment: 49-76 - Tilt: 6.3°
E - Segment: 19-43 - Tilt: 7.4°
E - Segment: 50-76 - Tilt: 6.4°
D - Segment: 19-44 - Tilt: 10.1°
D - Segment: 50-76 - Tilt: 8.1°
G - Segment: 19-44 - Tilt: 7.7°
G - Segment: 49-76 - Tilt: 0.4°
F - Segment: 19-44 - Tilt: 7.5°
F - Segment: 50-76 - Tilt: 4.7°
I - Segment: 20-44 - Tilt: 16.4°
I - Segment: 49-74 - Tilt: 13.0°
H - Segment: 20-44 - Tilt: 14.4°
H - Segment: 49-75 - Tilt: 7.5°
K - Segment: 20-44 - Tilt: 18.5°
K - Segment: 49-74 - Tilt: 14.0°
J - Segment: 20-44 - Tilt: 17.3°
J - Segment: 49-74 - Tilt: 12.7°
Structural assessment:
MAIDEN score = 68.1482
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]