Rotor ring of F-type Na⁺-ATPase from Ilyobacter tartaricus
Organism: Ilyobacter tartaricus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 1YCE
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 40.0 Å
Number of TM segments = 22
Sequence positions:
A: 19-44|49-75
C: 196-221|228-254
B: 107-133|138-165
E: 373-397|406-433
D: 284-309|317-344
G: 552-575|584-611
F: 462-486|496-522
I: 730-755|762-788
H: 641-665|673-699
K: 909-934|939-965
J: 820-844|850-876
Tilt angles:
A - Segment: 19-44 - Tilt: 15.9°
A - Segment: 49-75 - Tilt: 11.7°
C - Segment: 196-221 - Tilt: 15.7°
C - Segment: 228-254 - Tilt: 12.3°
B - Segment: 107-133 - Tilt: 17.2°
B - Segment: 138-165 - Tilt: 9.1°
E - Segment: 373-397 - Tilt: 13.7°
E - Segment: 406-433 - Tilt: 12.2°
D - Segment: 284-309 - Tilt: 13.1°
D - Segment: 317-344 - Tilt: 14.3°
G - Segment: 552-575 - Tilt: 8.3°
G - Segment: 584-611 - Tilt: 6.5°
F - Segment: 462-486 - Tilt: 11.0°
F - Segment: 496-522 - Tilt: 5.9°
I - Segment: 730-755 - Tilt: 8.1°
I - Segment: 762-788 - Tilt: 5.1°
H - Segment: 641-665 - Tilt: 1.6°
H - Segment: 673-699 - Tilt: 2.0°
K - Segment: 909-934 - Tilt: 13.8°
K - Segment: 939-965 - Tilt: 10.7°
J - Segment: 820-844 - Tilt: 13.1°
J - Segment: 850-876 - Tilt: 8.7°
Structural assessment:
MAIDEN score = -163.3824
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]