Particulate methane monooxygenase
Organism: Methylococcus capsulatus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF02461
PDB ID: 1YEW
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 9
Sequence positions:
A: 154-171|204-221
C: 629-643|672-688|713-728|755-769
B: 402-415|444-456|462-479
Tilt angles:
A - Segment: 154-171 - Tilt: 43.6°
A - Segment: 204-221 - Tilt: 41.9°
C - Segment: 629-643 - Tilt: 26.4°
C - Segment: 672-688 - Tilt: 38.1°
C - Segment: 713-728 - Tilt: 25.5°
C - Segment: 755-769 - Tilt: 38.0°
B - Segment: 402-415 - Tilt: 9.2°
B - Segment: 444-456 - Tilt: 17.7°
B - Segment: 462-479 - Tilt: 48.6°
Structural assessment:
MAIDEN score = -29.4845
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]