Spinach aquaporin SoPIP2
Organism: Spinacia oleracea
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00230
PDB ID: 2B5F
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 25.2 Å
Number of TM segments = 24
Sequence positions:
A: 41-59|75-92|119-137|162-180|198-214|242-259
C: 41-59|74-91|119-140|162-179|199-214|241-259
B: 41-59|75-92|119-137|162-179|199-214|241-259
D: 41-59|74-92|119-140|161-179|199-214|241-259
Tilt angles:
A - Segment: 41-59 - Tilt: 30.4°
A - Segment: 75-92 - Tilt: 32.1°
A - Segment: 119-137 - Tilt: 39.9°
A - Segment: 162-180 - Tilt: 25.7°
A - Segment: 198-214 - Tilt: 13.5°
A - Segment: 242-259 - Tilt: 41.1°
C - Segment: 41-59 - Tilt: 28.6°
C - Segment: 74-91 - Tilt: 22.9°
C - Segment: 119-140 - Tilt: 41.9°
C - Segment: 162-179 - Tilt: 34.3°
C - Segment: 199-214 - Tilt: 19.6°
C - Segment: 241-259 - Tilt: 34.2°
B - Segment: 41-59 - Tilt: 30.6°
B - Segment: 75-92 - Tilt: 33.4°
B - Segment: 119-137 - Tilt: 38.7°
B - Segment: 162-179 - Tilt: 34.6°
B - Segment: 199-214 - Tilt: 19.6°
B - Segment: 241-259 - Tilt: 33.3°
D - Segment: 41-59 - Tilt: 28.5°
D - Segment: 74-92 - Tilt: 24.3°
D - Segment: 119-140 - Tilt: 41.2°
D - Segment: 161-179 - Tilt: 31.5°
D - Segment: 199-214 - Tilt: 21.6°
D - Segment: 241-259 - Tilt: 35.3°
Structural assessment:
MAIDEN score = -269.1111
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]