Spinach aquaporin SoPIP2
Organism: Spinacia oleracea
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00230
PDB ID: 2B5F
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 28.0 Å
Number of TM segments = 24
Sequence positions:
A: 11-31|47-66|88-110|135-155|169-187|214-233
C: 471-491|507-526|548-570|595-615|621-638|665-686
B: 247-267|283-302|325-346|371-391|395-411|438-459
D: 698-718|734-753|776-799|822-842|851-868|895-916
Tilt angles:
A - Segment: 11-31 - Tilt: 34.2°
A - Segment: 47-66 - Tilt: 20.2°
A - Segment: 88-110 - Tilt: 35.7°
A - Segment: 135-155 - Tilt: 34.2°
A - Segment: 169-187 - Tilt: 24.9°
A - Segment: 214-233 - Tilt: 27.5°
C - Segment: 471-491 - Tilt: 34.0°
C - Segment: 507-526 - Tilt: 20.2°
C - Segment: 548-570 - Tilt: 36.8°
C - Segment: 595-615 - Tilt: 33.4°
C - Segment: 621-638 - Tilt: 12.1°
C - Segment: 665-686 - Tilt: 36.2°
B - Segment: 247-267 - Tilt: 33.2°
B - Segment: 283-302 - Tilt: 18.7°
B - Segment: 325-346 - Tilt: 39.2°
B - Segment: 371-391 - Tilt: 34.8°
B - Segment: 395-411 - Tilt: 14.8°
B - Segment: 438-459 - Tilt: 35.9°
D - Segment: 698-718 - Tilt: 32.6°
D - Segment: 734-753 - Tilt: 17.2°
D - Segment: 776-799 - Tilt: 40.6°
D - Segment: 822-842 - Tilt: 34.5°
D - Segment: 851-868 - Tilt: 12.8°
D - Segment: 895-916 - Tilt: 35.6°
Structural assessment:
MAIDEN score = -212.0069
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]