The membrane rotor of the v-type ATPase from Enterococcus hirae
Organism: Enterococcus hirae
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00137
PDB ID: 2BL2
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.3 Å
Number of TM segments = 40
Sequence positions:
A: 14-28|65-78|91-104|141-154
C: 326-340|377-390|403-416|453-466
B: 170-184|221-234|247-260|297-310
E: 638-651|689-702|715-728|765-778
D: 482-496|533-546|559-572|609-622
G: 950-963|1001-1015|1027-1040|1077-1091
F: 794-807|845-858|871-884|921-935
I: 1262-1275|1313-1326|1339-1352|1389-1402
H: 1106-1119|1157-1170|1183-1196|1233-1246
J: 1418-1432|1469-1482|1495-1508|1545-1558
Tilt angles:
A - Segment: 14-28 - Tilt: 1.8°
A - Segment: 65-78 - Tilt: 23.3°
A - Segment: 91-104 - Tilt: 10.4°
A - Segment: 141-154 - Tilt: 21.6°
C - Segment: 326-340 - Tilt: 2.9°
C - Segment: 377-390 - Tilt: 22.6°
C - Segment: 403-416 - Tilt: 11.0°
C - Segment: 453-466 - Tilt: 20.8°
B - Segment: 170-184 - Tilt: 2.5°
B - Segment: 221-234 - Tilt: 22.7°
B - Segment: 247-260 - Tilt: 10.6°
B - Segment: 297-310 - Tilt: 20.9°
E - Segment: 638-651 - Tilt: 8.5°
E - Segment: 689-702 - Tilt: 23.4°
E - Segment: 715-728 - Tilt: 12.4°
E - Segment: 765-778 - Tilt: 21.6°
D - Segment: 482-496 - Tilt: 3.4°
D - Segment: 533-546 - Tilt: 22.7°
D - Segment: 559-572 - Tilt: 11.7°
D - Segment: 609-622 - Tilt: 21.0°
G - Segment: 950-963 - Tilt: 7.5°
G - Segment: 1001-1015 - Tilt: 15.4°
G - Segment: 1027-1040 - Tilt: 12.0°
G - Segment: 1077-1091 - Tilt: 13.4°
F - Segment: 794-807 - Tilt: 7.8°
F - Segment: 845-858 - Tilt: 24.0°
F - Segment: 871-884 - Tilt: 12.4°
F - Segment: 921-935 - Tilt: 13.1°
I - Segment: 1262-1275 - Tilt: 7.4°
I - Segment: 1313-1326 - Tilt: 25.3°
I - Segment: 1339-1352 - Tilt: 11.8°
I - Segment: 1389-1402 - Tilt: 23.0°
H - Segment: 1106-1119 - Tilt: 7.6°
H - Segment: 1157-1170 - Tilt: 24.3°
H - Segment: 1183-1196 - Tilt: 11.5°
H - Segment: 1233-1246 - Tilt: 22.6°
J - Segment: 1418-1432 - Tilt: 2.0°
J - Segment: 1469-1482 - Tilt: 24.1°
J - Segment: 1495-1508 - Tilt: 11.0°
J - Segment: 1545-1558 - Tilt: 22.3°
Structural assessment:
MAIDEN score = -427.8151
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]