Sr ca(2+)-ATPase in the hne2 state complexed with the thapsigargin derivative boc-12adt
Organism: Oryctolagus cuniculus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00122
PDB ID: 2BY4
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.7 Å
Number of TM segments = 10
Sequence positions:
A: 62-77|88-101|263-282|291-314|762-782|786-809|835-849|900-917|920-941|973-986
Tilt angles:
A - Segment: 62-77 - Tilt: 31.6°
A - Segment: 88-101 - Tilt: 26.6°
A - Segment: 263-282 - Tilt: 47.0°
A - Segment: 291-314 - Tilt: 62.9°
A - Segment: 762-782 - Tilt: 49.3°
A - Segment: 786-809 - Tilt: 54.5°
A - Segment: 835-849 - Tilt: 24.8°
A - Segment: 900-917 - Tilt: 40.1°
A - Segment: 920-941 - Tilt: 43.6°
A - Segment: 973-986 - Tilt: 31.7°
Structural assessment:
MAIDEN score = -76.4010
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]