Bovine heart cytochrome C oxidase at the fully oxidized state
Organism: Bos taurus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00115
PDB ID: 2DYR
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 24.6 Å
Number of TM segments = 54
Sequence positions:
A: 22-39|56-75|103-118|141-161|190-211|233-251|275-291|304-321|340-359|373-390|412-429|453-469
C: 85-100|126-143|165-181|197-213|240-257
B: 27-44|61-77
D: 82-99
G: 19-37
I: 19-34
K: 17-33
J: 38-55
M: 19-36
L: 26-42
O: 27-44|61-77
N: 22-39|57-75|101-118|141-161|190-208|233-251|275-291|304-321|339-359|373-390|412-428|453-470
Q: 81-99
P: 19-35|37-52|85-99|126-143|165-181|198-214|240-257
T: 19-37
W: 37-54
V: 19-34
Y: 26-42
X: 16-32
Z: 19-35
Tilt angles:
A - Segment: 22-39 - Tilt: 34.8°
A - Segment: 56-75 - Tilt: 28.1°
A - Segment: 103-118 - Tilt: 22.6°
A - Segment: 141-161 - Tilt: 41.1°
A - Segment: 190-211 - Tilt: 46.0°
A - Segment: 233-251 - Tilt: 38.0°
A - Segment: 275-291 - Tilt: 27.1°
A - Segment: 304-321 - Tilt: 40.2°
A - Segment: 340-359 - Tilt: 40.2°
A - Segment: 373-390 - Tilt: 20.9°
A - Segment: 412-429 - Tilt: 31.6°
A - Segment: 453-469 - Tilt: 29.4°
C - Segment: 85-100 - Tilt: 4.8°
C - Segment: 126-143 - Tilt: 6.7°
C - Segment: 165-181 - Tilt: 25.2°
C - Segment: 197-213 - Tilt: 21.8°
C - Segment: 240-257 - Tilt: 12.8°
B - Segment: 27-44 - Tilt: 27.1°
B - Segment: 61-77 - Tilt: 17.6°
D - Segment: 82-99 - Tilt: 43.7°
G - Segment: 19-37 - Tilt: 27.9°
I - Segment: 19-34 - Tilt: 11.6°
K - Segment: 17-33 - Tilt: 10.8°
J - Segment: 38-55 - Tilt: 34.6°
M - Segment: 19-36 - Tilt: 27.1°
L - Segment: 26-42 - Tilt: 26.5°
O - Segment: 27-44 - Tilt: 27.1°
O - Segment: 61-77 - Tilt: 16.9°
N - Segment: 22-39 - Tilt: 34.7°
N - Segment: 57-75 - Tilt: 31.2°
N - Segment: 101-118 - Tilt: 32.8°
N - Segment: 141-161 - Tilt: 40.0°
N - Segment: 190-208 - Tilt: 40.7°
N - Segment: 233-251 - Tilt: 37.8°
N - Segment: 275-291 - Tilt: 26.0°
N - Segment: 304-321 - Tilt: 40.3°
N - Segment: 339-359 - Tilt: 41.3°
N - Segment: 373-390 - Tilt: 21.7°
N - Segment: 412-428 - Tilt: 27.3°
N - Segment: 453-470 - Tilt: 27.4°
Q - Segment: 81-99 - Tilt: 35.4°
P - Segment: 19-35 - Tilt: 7.5°
P - Segment: 37-52 - Tilt: 22.0°
P - Segment: 85-99 - Tilt: 8.7°
P - Segment: 126-143 - Tilt: 7.4°
P - Segment: 165-181 - Tilt: 24.6°
P - Segment: 198-214 - Tilt: 8.9°
P - Segment: 240-257 - Tilt: 13.1°
T - Segment: 19-37 - Tilt: 27.0°
W - Segment: 37-54 - Tilt: 30.6°
V - Segment: 19-34 - Tilt: 10.7°
Y - Segment: 26-42 - Tilt: 26.1°
X - Segment: 16-32 - Tilt: 22.2°
Z - Segment: 19-35 - Tilt: 20.5°
Structural assessment:
MAIDEN score = -437.4684
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]