Bovine heart cytochrome C oxidase at the fully oxidized state
Organism: Bos taurus
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF00115
PDB ID: 2DYR
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 29.7 Å
Number of TM segments = 52
Sequence positions:
A: 17-38|54-75|99-118|140-161|185-210|230-253|271-290|302-323|337-359|370-390|408-428|449-469
C: 819-839|862-881|899-919|933-953|974-995
B: 538-558|572-590
D: 1073-1098
G: 1360-1381
I: 1523-1542
K: 1646-1667
J: 1613-1634
M: 1748-1768
L: 1707-1728
O: 2313-2334|2346-2364
N: 1792-1813|1828-1850|1874-1893|1915-1936|1960-1985|2005-2028|2046-2065|2078-2099|2110-2134|2145-2165|2183-2203|2226-2245
Q: 2848-2873
P: 2594-2614|2637-2656|2675-2694|2707-2728|2750-2770
T: 3136-3157
W: 3388-3409
V: 3297-3316
Y: 3482-3503
X: 3421-3440
Z: 3523-3543
Tilt angles:
A - Segment: 17-38 - Tilt: 31.5°
A - Segment: 54-75 - Tilt: 16.5°
A - Segment: 99-118 - Tilt: 25.5°
A - Segment: 140-161 - Tilt: 37.7°
A - Segment: 185-210 - Tilt: 41.5°
A - Segment: 230-253 - Tilt: 39.3°
A - Segment: 271-290 - Tilt: 26.9°
A - Segment: 302-323 - Tilt: 35.2°
A - Segment: 337-359 - Tilt: 31.9°
A - Segment: 370-390 - Tilt: 6.4°
A - Segment: 408-428 - Tilt: 28.7°
A - Segment: 449-469 - Tilt: 25.9°
C - Segment: 819-839 - Tilt: 14.5°
C - Segment: 862-881 - Tilt: 4.0°
C - Segment: 899-919 - Tilt: 21.6°
C - Segment: 933-953 - Tilt: 26.3°
C - Segment: 974-995 - Tilt: 21.4°
B - Segment: 538-558 - Tilt: 24.0°
B - Segment: 572-590 - Tilt: 10.0°
D - Segment: 1073-1098 - Tilt: 39.5°
G - Segment: 1360-1381 - Tilt: 22.8°
I - Segment: 1523-1542 - Tilt: 0.7°
K - Segment: 1646-1667 - Tilt: 16.8°
J - Segment: 1613-1634 - Tilt: 31.6°
M - Segment: 1748-1768 - Tilt: 27.0°
L - Segment: 1707-1728 - Tilt: 21.7°
O - Segment: 2313-2334 - Tilt: 26.2°
O - Segment: 2346-2364 - Tilt: 11.4°
N - Segment: 1792-1813 - Tilt: 30.7°
N - Segment: 1828-1850 - Tilt: 22.0°
N - Segment: 1874-1893 - Tilt: 26.1°
N - Segment: 1915-1936 - Tilt: 38.6°
N - Segment: 1960-1985 - Tilt: 42.8°
N - Segment: 2005-2028 - Tilt: 40.4°
N - Segment: 2046-2065 - Tilt: 28.2°
N - Segment: 2078-2099 - Tilt: 36.2°
N - Segment: 2110-2134 - Tilt: 36.3°
N - Segment: 2145-2165 - Tilt: 5.8°
N - Segment: 2183-2203 - Tilt: 28.1°
N - Segment: 2226-2245 - Tilt: 13.7°
Q - Segment: 2848-2873 - Tilt: 41.0°
P - Segment: 2594-2614 - Tilt: 13.9°
P - Segment: 2637-2656 - Tilt: 4.9°
P - Segment: 2675-2694 - Tilt: 17.1°
P - Segment: 2707-2728 - Tilt: 22.3°
P - Segment: 2750-2770 - Tilt: 21.3°
T - Segment: 3136-3157 - Tilt: 14.9°
W - Segment: 3388-3409 - Tilt: 31.0°
V - Segment: 3297-3316 - Tilt: 8.2°
Y - Segment: 3482-3503 - Tilt: 22.6°
X - Segment: 3421-3440 - Tilt: 13.2°
Z - Segment: 3523-3543 - Tilt: 28.2°
Structural assessment:
MAIDEN score = -480.2061
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]