Multidrug Transporter EmrD from Escherichia coli
Organism: Escherichia coli
Model: Experimental
Representation: Coarse-grained
Type: α-helical
Pfam Acc: PF07690
PDB ID: 2GFP
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 27.0 Å
Number of TM segments = 16
Sequence positions:
A: 3-27|32-51|64-83|86-106|128-145|149-167|207-223|228-245|323-343|345-362
B: 378-402|407-426|438-458|461-481|698-718|720-735
Tilt angles:
A - Segment: 3-27 - Tilt: 43.5°
A - Segment: 32-51 - Tilt: 18.3°
A - Segment: 64-83 - Tilt: 17.8°
A - Segment: 86-106 - Tilt: 30.1°
A - Segment: 128-145 - Tilt: 13.7°
A - Segment: 149-167 - Tilt: 28.4°
A - Segment: 207-223 - Tilt: 27.0°
A - Segment: 228-245 - Tilt: 10.2°
A - Segment: 323-343 - Tilt: 27.7°
A - Segment: 345-362 - Tilt: 16.3°
B - Segment: 378-402 - Tilt: 42.9°
B - Segment: 407-426 - Tilt: 19.9°
B - Segment: 438-458 - Tilt: 18.2°
B - Segment: 461-481 - Tilt: 26.0°
B - Segment: 698-718 - Tilt: 29.9°
B - Segment: 720-735 - Tilt: 4.3°
Structural assessment:
MAIDEN score = -60.0425
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]