Human VDAC-1 in LDAO micelles
Organism: Homo sapiens
Model: Experimental
Representation: Coarse-grained
Type: β-sheet
Pfam Acc: PF01459
PDB ID: 2K4T
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 20.0 Å
Number of TM segments = 18
Sequence positions:
A: 4-14|25-33|39-48|55-63|68-76|81-89|94-101|139-146|148-154|168-175|177-183|191-198|202-208|220-225|232-237|243-249|256-262|275-281
Tilt angles:
A - Segment: 4-14 - Tilt: 16.5°
A - Segment: 25-33 - Tilt: 49.6°
A - Segment: 39-48 - Tilt: 50.8°
A - Segment: 55-63 - Tilt: 51.4°
A - Segment: 68-76 - Tilt: 48.4°
A - Segment: 81-89 - Tilt: 42.5°
A - Segment: 94-101 - Tilt: 46.0°
A - Segment: 139-146 - Tilt: 38.1°
A - Segment: 148-154 - Tilt: 32.4°
A - Segment: 168-175 - Tilt: 34.8°
A - Segment: 177-183 - Tilt: 28.7°
A - Segment: 191-198 - Tilt: 40.6°
A - Segment: 202-208 - Tilt: 29.4°
A - Segment: 220-225 - Tilt: 32.4°
A - Segment: 232-237 - Tilt: 32.3°
A - Segment: 243-249 - Tilt: 31.5°
A - Segment: 256-262 - Tilt: 31.2°
A - Segment: 275-281 - Tilt: 38.2°
Structural assessment:
MAIDEN score = 426.5016
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]