M2 transmembrane peptide of the influenza A virus in DMPC lipid bilayers bound to deuterated amantadine
Organism: Influenza virus
Model: Experimental
Representation: Atomistic
Type: α-helical
Pfam Acc: PF00599
PDB ID: 2KQT
Membrane assignment:
Output PDB file Download
Hydrophobic thickness = 21.0 Å
Number of TM segments = 4
Sequence positions:
A: 25-40
C: 29-43
B: 25-43
D: 29-41
Tilt angles:
A - Segment: 25-40 - Tilt: 23.2°
C - Segment: 29-43 - Tilt: 33.9°
B - Segment: 25-43 - Tilt: 40.6°
D - Segment: 29-41 - Tilt: 9.5°
Structural assessment:
MAIDEN score = -42.9168
The MAIDEN score is aimed at assessing the relative quality, i.e. ranking several models (the lower the score, the better the model). It comes here with a color code (red > yellow > green > blue), which is derived from a z-score calculation and indicates the absolute quality.
Scores for all residue pairs Download
[creation date: Sep-08-2016]